Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3038 ATGGCTTCTTCGCACCCAAAGAATGTGGGAATCCTTGCCATGGACATCTACTTTCCTCCCACATGCGTAAAACAGGAAGCTTTGGAGGCTCACGATGGGGCCAGCAAAGGGAAATACACTATTGGGCTTGGACAAGATTGCTTGGCATTCTGCACTGAGGTTGAAGATGTTATCTCTATGAGCTTGACAGCTGTATCCTCGCTTCTTAAAAAGTATAAGATTGATCCGAAACAAATTGGACGCATGGAAGTTGGTAGTGAAACTGTCATTGACAAAAGCAAATCCATTAAGACCTTCCTGATGCAACTCTTCGAGGAGAGTGGTAATACTGACATCGAAGGTGTTGATTCAACAAATGCATGCTATGGTGGAACAGCAGCTCTGTTCAATTGCGTGAATTGGGTGGAGAGTAGTTCATGGGATGGTCGCTATGGACTTGTCATATGTGCAGATAGCGCGGTCTACGCTGAAGGACCTGCACGTCCTACCGGAGGAGCAGCTGCTATTGCCATACTTGTGGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAGTTCAGAGGCAGTCACATGGCTCATGCCTATGACTTTTACAAGCCAAATCTTGCAAGTGAATACCCAGTTGTTGATGGAAAACTCTCGCAGAATTGTTATCTCATGGCACTTGATTCTTGCTACAAGGTTTTCTGTGAGAAATTCGAAAAGTTGGAGGGGAAGCCCTTTTCAATGGCAGAGGCTGATTACTTTGTGTTTCATTCTCCATATAACAAGCTTGTCCAAAAAAGCTTTGGTCGGCTATACTACGATGACTTCCTGAGAAATCCCAGTTTTGTTGATGAAGCTGCCAGAACATCCTTGGAACCTTATAAATCACTATCGGGTGACGAAAGCTACAATAGTCGTGATCTTGAAAAGGCAAACCAGCAAGCCTCGAAAAAGATATATGACACGAAGGTGCAGCCCAGCACGTTAATACCGAAAGAAGTTGGTAACATGTACACTGCATCTCTTTATGCAGCATTTGCATCACTCCTTCACAATGAGAACAGCTCACTGGTTGGTAAACGTGTAGTTATGTTCTCATATGGAAGTGGTTTAACGGCTACAATGTTCTCCTTCAAGATTCAAGAAGGTCAAGGCCCCTTTACTTTGTCCAACATTGTAACATTGATGGATGTGGCTGGCAAGTTGAAGCAGAGAGTTGAGTTTCCTCCTGAAAAATTTGTAGAAACAATGAAGCTGATGGAACACCGATATGGGGCAAAGGACTATGTGACAAGCGGTGACTGTAGCAACTTACCTGCAGGCACCTTCTATCTTACCAAAGTTGATTCCATGTACCGGAGATTTTATGCCAGAAAGGACACTACCAGCACATGA 1377 0.4415 MASSHPKNVGILAMDIYFPPTCVKQEALEAHDGASKGKYTIGLGQDCLAFCTEVEDVISMSLTAVSSLLKKYKIDPKQIGRMEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVICADSAVYAEGPARPTGGAAAIAILVGPDAPIAFESKFRGSHMAHAYDFYKPNLASEYPVVDGKLSQNCYLMALDSCYKVFCEKFEKLEGKPFSMAEADYFVFHSPYNKLVQKSFGRLYYDDFLRNPSFVDEAARTSLEPYKSLSGDESYNSRDLEKANQQASKKIYDTKVQPSTLIPKEVGNMYTASLYAAFASLLHNENSSLVGKRVVMFSYGSGLTATMFSFKIQEGQGPFTLSNIVTLMDVAGKLKQRVEFPPEKFVETMKLMEHRYGAKDYVTSGDCSNLPAGTFYLTKVDSMYRRFYARKDTTST* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3038 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Ahy5g3038 458 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Ahy5g3038 458 Gene3D - 4 455 IPR016039 GO:0016746
Ahy5g3038 458 CDD init_cond_enzymes 8 372 - -
Ahy5g3038 458 SUPERFAMILY Thiolase-like 179 452 IPR016039 GO:0016746
Ahy5g3038 458 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Ahy5g3038 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 6 178 IPR013528 -
Ahy5g3038 458 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Ahy5g3038 458 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3038 Ahy-Chr5 111939580 111943723 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3038 K01641 - gmx:100794889 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3442 15 157001809 157006145 Ahy5g3038 5 111939580 111943723 hybridization