Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1148 ATGGCAACCGAAAGTCCAATTAGAATTTCAGAAGCTGGGGGTAAGTGGCCCTCTCTTAAGGAGGGTTCTACTTTTGGTTCACCAGCTCGTAACATGGCAACAGAAGATTTAGGTATACTTGTACAGGGGCATAGATTCCATGGTAGTGGAAGGGATATGGCACCCAATCGCAGTGGAAGTGCTCCTCCCAGTATGGAAGGCTCATTTCTTGCTATAGAAAACTTGTTATCCCAACAGAACACCACTCAGAATGCAAGCTTGGCAACTTTGAGCAGAGCTATGCAAAAATATGACTCTGAGGAACAATTACGAGCCGATCCAGCTTATTTGGCATATTACAATTCCAATGTCAACCTAAACCCTAGGCTTCCTCCTCCTCTTATCTCTCGGGAAAATCGCCATCATATTAGCAATTTTAGGAATAATTGGGGATTTTCTTCTGCAGATGATAGCAGTAAAATTTCTTTTCATTTACCGCAAGGAACTCTTGCAACGCATAGGGAGGAGTCTGAGGATGATTCACTGCAGCAGCCATATGATAATGAGCTAGTTAAGACAGATGGTCTATGGAGTAGACCAGATGCATCAGCATCATTACCGTCACAGTGCAAAAATATAGTTGACTCAATTCAGGAAGATTTCCCCCATACCATGTTACCTGTATATAGTAATTCTCATTCTGTCAGTCGTTGTGGACTGGCGGATGAACCAATTGATTTGGATGCTGTCTCCAGTTCTTCTCGTGATCCTACTGTCCCTTCAGTCGAGGTTGGTAAACCCATTGTAGGTGCAGACGATATGAGGATGTCATCAAGTGCTGGTACCAATGCTCCTCTTGCAAGCTCATCATCTCTTGAATCCACTGGTAGCATGGGTATTAGCGACTTAGATGTTTCAATTGTGGAGTCTCAATTGAAGGCTTTAAGTGTATCTAATCTATCAAATTCAGAAAGCCCGAGTTATGAAGAAAAATGGAAGACTGATTACCAGAATAATTTAATGCAACAACAGATGTTCCAGCAACAAAACAATCCATGTGAAGTTCCCAATGCCAACTCTCAGAATGTGAATTCAGCCTACATTGTTAGAGAGCAGTTTCCTCATAATGCTAGCAAGTTCTCCTCTGATGTCCAGCCACTACTGCAGTCATCTGGGTTTACACCTCCACTATATGCCACAGCAGCAGCAGCTTACATGACTTCACCAAATCCATTCTACACTAATTTGCAGGCCTCAGGCATGTATACTCCACAATATGTTGGTGGATACACTATAAATCCCTCAGTTGTTCCTTCATATATTCCTGCATACCCTCCTCATGGTGCTGTACCATATATTGTTGATGGGGCTACTAGTTCCAGTTATACCCCAATGACACCAGGGCTTTCTGCTGGAGGAAGCATTTCACATGGAGCTGAAATGACACATGCAAACAAGTTCCCTGGGCAATACGGATTTACTATGCAGCCTTCTTTCACTGATCCTATGTACATGCAATATCACCAGCAGCCTTTTGTCGAGGGATATGGTGTTTCTGGTCATTTTGATCCAATGGCACCGAGGGCAAGTGGTGTTAGCCAGATTAGTCCTTTTGATTCACAAAAGAGGCCCACAAGTGGCGCTTATTTGGAAGATAAGAATTTACATCATCAGAGAAGTGGTGCAAATATGAACTTAAGAAGAGGAGGATTGACAATCCCCATCCCTAATTATTTTGGTCCGCCAACAAACATGGGTTATGTAATGCAGTATCCAAGTTCACCGCTTCCTTGTCCTGTTTTGCCTGGATACCCAGAAGGAAGTCCTGGCCTTCCAGGAGTAAGGAATGAGATGAAGCTTTCCCCAGCTTCTGGTAGAAATGGAGGCGTATTATCTGGATGGCAAGGACATAAATCCTTTGACAGTGCCCATGACCCGAAAATTGTTAATTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGACACATTGTTGAATTTAGTGCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGTTGGAAAGTTGCAGTGTTGAAGAGAAGGCATTGGTATTCAAAGAAGTTCTTCCACATGCTTCGAAGTTAATGACCGATGTATTTGGTAACTATGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCTAGTCGACTAGGTGGTCAGATATTGCCTTTAAGTCTGCAGATGTATGGCTGCCGTGTAATCCAAAAGGCACTTGAGGTTATTGAACTTGAACAAAAAGCCCAGCTTGTTCGTGAGCTAGATGGACATGTTATGAGATGTGTACGCGATCAAATTGGGAATCATGTTATACAGAAATGCATTGAATCTATTCCAACCAAGAAAATTGCATTTATAATTTCTGCATTCCGTGGTCAAGTTGCTATTCTGTCAATGCACCCTTATGGTTGCCGAGTCATACAGCATGTATTGGAGAGAGGAAAGGCTCAGGAAAGGAGCCAAATCATTAGCAAGCTATCAGGACATATTGTTCAATTAAGCCAGCATAAGTTCGCTTCAAATGTCATAGAGAAATGTTTAGAGTATGGAGATGCCACTGAACGGGAGTTGTTAATTTCCGAGATTATTGGACATGAAGAACGAAATGACAATTTATTGATCATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAAGGTTATTGATATCTGTTCTGAAAATCAGCGAGTAATCTTGCTTTCTCACATCAGAGTTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACAGCAATTTGGAGAGGATCAAACACCCAGATCAGGATGA 2859 0.4201 MATESPIRISEAGGKWPSLKEGSTFGSPARNMATEDLGILVQGHRFHGSGRDMAPNRSGSAPPSMEGSFLAIENLLSQQNTTQNASLATLSRAMQKYDSEEQLRADPAYLAYYNSNVNLNPRLPPPLISRENRHHISNFRNNWGFSSADDSSKISFHLPQGTLATHREESEDDSLQQPYDNELVKTDGLWSRPDASASLPSQCKNIVDSIQEDFPHTMLPVYSNSHSVSRCGLADEPIDLDAVSSSSRDPTVPSVEVGKPIVGADDMRMSSSAGTNAPLASSSSLESTGSMGISDLDVSIVESQLKALSVSNLSNSESPSYEEKWKTDYQNNLMQQQMFQQQNNPCEVPNANSQNVNSAYIVREQFPHNASKFSSDVQPLLQSSGFTPPLYATAAAAYMTSPNPFYTNLQASGMYTPQYVGGYTINPSVVPSYIPAYPPHGAVPYIVDGATSSSYTPMTPGLSAGGSISHGAEMTHANKFPGQYGFTMQPSFTDPMYMQYHQQPFVEGYGVSGHFDPMAPRASGVSQISPFDSQKRPTSGAYLEDKNLHHQRSGANMNLRRGGLTIPIPNYFGPPTNMGYVMQYPSSPLPCPVLPGYPEGSPGLPGVRNEMKLSPASGRNGGVLSGWQGHKSFDSAHDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCSVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELASRLGGQILPLSLQMYGCRVIQKALEVIELEQKAQLVRELDGHVMRCVRDQIGNHVIQKCIESIPTKKIAFIISAFRGQVAILSMHPYGCRVIQHVLERGKAQERSQIISKLSGHIVQLSQHKFASNVIEKCLEYGDATERELLISEIIGHEERNDNLLIMMKDQFANYVIQKVIDICSENQRVILLSHIRVHAHALKKYTYGKHIVARLEQQFGEDQTPRSG* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1148 952 MobiDBLite consensus disorder prediction 1 30 - -
Ahy4g1148 952 Pfam Pumilio-family RNA binding repeat 736 769 IPR001313 GO:0003723
Ahy4g1148 952 Pfam Pumilio-family RNA binding repeat 888 919 IPR001313 GO:0003723
Ahy4g1148 952 Pfam Pumilio-family RNA binding repeat 808 841 IPR001313 GO:0003723
Ahy4g1148 952 Pfam Pumilio-family RNA binding repeat 844 878 IPR001313 GO:0003723
Ahy4g1148 952 Pfam Pumilio-family RNA binding repeat 778 802 IPR001313 GO:0003723
Ahy4g1148 952 Pfam Pumilio-family RNA binding repeat 664 698 IPR001313 GO:0003723
Ahy4g1148 952 Pfam Pumilio-family RNA binding repeat 701 729 IPR001313 GO:0003723
Ahy4g1148 952 Gene3D - 825 947 IPR011989 -
Ahy4g1148 952 Gene3D - 641 824 IPR011989 -
Ahy4g1148 952 ProSiteProfiles Pumilio RNA-binding repeat profile. 660 695 IPR001313 GO:0003723
Ahy4g1148 952 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 821 945 - -
Ahy4g1148 952 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 46 823 - -
Ahy4g1148 952 ProSiteProfiles Pumilio RNA-binding repeat profile. 840 875 IPR001313 GO:0003723
Ahy4g1148 952 SMART pum_5 840 875 IPR001313 GO:0003723
Ahy4g1148 952 SMART pum_5 696 731 IPR001313 GO:0003723
Ahy4g1148 952 SMART pum_5 660 695 IPR001313 GO:0003723
Ahy4g1148 952 SMART pum_5 882 917 IPR001313 GO:0003723
Ahy4g1148 952 SMART pum_5 732 767 IPR001313 GO:0003723
Ahy4g1148 952 SMART pum_5 768 803 IPR001313 GO:0003723
Ahy4g1148 952 SMART pum_5 804 839 IPR001313 GO:0003723
Ahy4g1148 952 MobiDBLite consensus disorder prediction 241 288 - -
Ahy4g1148 952 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 640 952 IPR033133 GO:0003723
Ahy4g1148 952 ProSiteProfiles Pumilio RNA-binding repeat profile. 696 731 IPR001313 GO:0003723
Ahy4g1148 952 ProSiteProfiles Pumilio RNA-binding repeat profile. 768 803 IPR001313 GO:0003723
Ahy4g1148 952 ProSiteProfiles Pumilio RNA-binding repeat profile. 876 917 IPR001313 GO:0003723
Ahy4g1148 952 CDD Pumilio 655 939 IPR033712 GO:0003723
Ahy4g1148 952 ProSiteProfiles Pumilio RNA-binding repeat profile. 804 839 IPR001313 GO:0003723
Ahy4g1148 952 PANTHER PUMILIO HOMOLOG 5 821 945 - -
Ahy4g1148 952 PANTHER PUMILIO HOMOLOG 5 46 823 - -
Ahy4g1148 952 SUPERFAMILY ARM repeat 645 940 IPR016024 -
Ahy4g1148 952 MobiDBLite consensus disorder prediction 269 288 - -
Ahy4g1148 952 ProSiteProfiles Pumilio RNA-binding repeat profile. 732 767 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1148 Ahy-Chr4 29582974 29591289 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1148 K17943 - gmx:100811036 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1242 14 27439209 27447636 Ahy4g1148 4 29582974 29591289 hybridization