Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy4g1025 | ATGCCTTCATCTATATCCAGTTTGGTATCACTTCAGTATGATGATCAGTACTTCTTGGCAAGCTCCATGGACGGAACGATGAGGCTCTATGATCTTCGCCTGCTTCAGAGAGGTTCTGTTCAATCTTATGAAGGGCATGTGAATTCCCATTCGCGTATACAACTCGGTTTTGACCCAGATGAGAGATTTGTTATGTCAGGTGGAGAGGATCGCAACCTACGGTCGTAG | 228 | 0.4561 | MPSSISSLVSLQYDDQYFLASSMDGTMRLYDLRLLQRGSVQSYEGHVNSHSRIQLGFDPDERFVMSGGEDRNLRS* | 76 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy4g1025 | 75 | PANTHER | KATANIN P80 SUBUNIT | 1 | 74 | - | - | |
| Ahy4g1025 | 75 | Gene3D | - | 2 | 75 | IPR015943 | GO:0005515 | |
| Ahy4g1025 | 75 | SUPERFAMILY | WD40 repeat-like | 3 | 74 | IPR036322 | GO:0005515 | |
| Ahy4g1025 | 75 | Pfam | WD domain, G-beta repeat | 12 | 31 | IPR001680 | GO:0005515 | |
| Ahy4g1025 | 75 | Pfam | WD domain, G-beta repeat | 40 | 74 | IPR001680 | GO:0005515 | |
| Ahy4g1025 | 75 | PANTHER | TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN | 1 | 74 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy4g1025 | Ahy-Chr4 | 20707091 | 20708986 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy4g1025 | 6 | 74 | Miscellaneous Gene Families | AT5G08390 | 29.577 | 1.38e-08 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy4g1025 | K11799 | - | ahf:112796476 | 151.754 |