Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0950 ATGATCAAGTTAACACATTTACTCACTGTCACTAACAAGCTTCCTCATTCTTCCGAATCATGCTATTCGATTTGGAACCCTAATCGTTCCTTGTCTCTCTCTTCCCCTTTCCATTCCCATTGCTATTCTCTCACAGATCACAGGGTACTCCACAGGGTTCTTGAACAATGCAGAGTTTCCAGGGATTCCAAAACTGCAGCAAAAACCCATGCAAGGGTTGTAGTACTTGGGTATGCTACGTACCCATCACTTGTTTCTTCTCTGGTTTCAACCTATGCTAACTGTCACCTACCCCACATTGCAAATCACGTTGTTCATCATGCTTTCACCCATGTTTCGAACCTATTCAACATGAACTTGATACTTGAAAGGTTGATGAAAGTTGGGCAATGCGATGTTGCCAAGAAGGTGTTTGTTAAAATGCCTGTTCGAGATGTTGTTTCTTGGAACACCATGATTGGAGGGTACGTGAAGAACTCGCGGGTTGTTGATGCACTGAGCATTTTCAGGGGGATGCTGAATGCTAAAGTTGAGCCCGACGGGTTCACATTTGCTTCTGTGGTTACTGCGTGCGCACGCCTTGGGGCTCTTGCTAATGCCAAGTGGGTGCATACTTTGATGGTGGAGAAGAGGATTGAGCTGAACTATATACTGAGTGCTGCATTGATTGACATGTATGCTAAGTGTGGTAGAATTGATGTTTCGAAATGTGTTTTTGAAGATGGTGTGCGCGATCATGTGTCGGTTTGGAATGCTATGATTAATGGGTTGGCAATTCACGGGCTTGCTTTGGATGCAGCTGCAGTGTTTTCTAGGATGGAGATGGAAAATGTTTCGCCTGATAGTGTTACTTTTATTGGGATTCTGATAGCTTGTAGCCATTGTGGATTGGTTGAAGAAGGTCGTAAGTACTTTGATATGATGCAGAACCAATTTTTAATTCAGCCACAACTTGAACATTATGGTACCATGGTTGATCTGTTAGGACGATCAGGGCTTTTGGATGACGCGTATGACATGATTAAAGCTATGCCAATTGAGCCCGATGTTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAAACCATAGAAAGAAAGAACTTGGTGAAGTTGCAATTGCCAATATATCACGTCTTGAGAGTGGTGATTTCGTCCTGCTATCGAATATGTATTGCTCTTTAAAGAACTGGGATAGTGCTGAGAGGGTGAGACAGATGATGAAAAAGGGAGGAGTTCATAAAAAACAGGGTAAGAGTTGGATTGAATTGGGGGGCAGCATTCACCAATTCAAGGCAGCCAATCACTCGCATGCTGAAATGAAAGCAATTTACAGAGTGTTGGAAGGACTGAACCAAAGGGCTAAGCTGGAAGGCTTTGCTCCCATGACAGAGTTGGTTTTGATGGATGTTTCCGAAGAGGAAAAAGAGGAAAATTTAAACTTTCATAGTGAGAAGTTGGCCTTGGTCTATGCCGTGTTGAAAACTAGCCCTGGAACTAAAATCAGAATTTTCAAGAATCTTCGTATCTGTCAAGACTGTCATAATTGGATAAAAATTGTGTCCAGAATATTAAACAGAGAAATAATCGTGAGGGATCGCATCCGTTTTCACCAATTTGAAGGTGGTTTTTGCTCTTGCAGAGACTACTGGTAG 1653 0.4253 MIKLTHLLTVTNKLPHSSESCYSIWNPNRSLSLSSPFHSHCYSLTDHRVLHRVLEQCRVSRDSKTAAKTHARVVVLGYATYPSLVSSLVSTYANCHLPHIANHVVHHAFTHVSNLFNMNLILERLMKVGQCDVAKKVFVKMPVRDVVSWNTMIGGYVKNSRVVDALSIFRGMLNAKVEPDGFTFASVVTACARLGALANAKWVHTLMVEKRIELNYILSAALIDMYAKCGRIDVSKCVFEDGVRDHVSVWNAMINGLAIHGLALDAAAVFSRMEMENVSPDSVTFIGILIACSHCGLVEEGRKYFDMMQNQFLIQPQLEHYGTMVDLLGRSGLLDDAYDMIKAMPIEPDVVIWRALLSACRNHRKKELGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRQMMKKGGVHKKQGKSWIELGGSIHQFKAANHSHAEMKAIYRVLEGLNQRAKLEGFAPMTELVLMDVSEEEKEENLNFHSEKLALVYAVLKTSPGTKIRIFKNLRICQDCHNWIKIVSRILNREIIVRDRIRFHQFEGGFCSCRDYW* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0950 550 Pfam PPR repeat 283 309 IPR002885 -
Ahy4g0950 550 Pfam PPR repeat 320 344 IPR002885 -
Ahy4g0950 550 Pfam PPR repeat 249 277 IPR002885 -
Ahy4g0950 550 Pfam DYW family of nucleic acid deaminases 458 550 IPR032867 GO:0008270
Ahy4g0950 550 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Ahy4g0950 550 TIGRFAM PPR: pentatricopeptide repeat domain 147 180 IPR002885 -
Ahy4g0950 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Ahy4g0950 550 Gene3D Tetratricopeptide repeat domain 260 450 IPR011990 GO:0005515
Ahy4g0950 550 Pfam E motif 363 422 IPR046848 -
Ahy4g0950 550 Gene3D Tetratricopeptide repeat domain 98 233 IPR011990 GO:0005515
Ahy4g0950 550 Pfam PPR repeat family 144 193 IPR002885 -
Ahy4g0950 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 496 - -
Ahy4g0950 550 PANTHER OS07G0578800 PROTEIN-RELATED 28 496 IPR045215 GO:0003723|GO:0009451
Ahy4g0950 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0950 Ahy-Chr4 17969922 17972489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0950 86 550 Glycoside Hydrolase AT3G49170 37.131 1.61e-103 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0950 - - lang:109344997 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1046 14 18195970 18197975 Ahy4g0950 4 17969922 17972489 hybridization