Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0908 ATGTCATCCTTAAGCAGAGAATTGGTGTTTCTCATTCTCCAATTCTTTCAAGAAGAGAACTTGAAGGACACTATTCACAAGTTGCAGCAGGAATCTGGATACTTCTTTGATATGAAGTACTTTGAAGAGAAAGCACTGAACGGAGAGTGGGAAATAGTTGAGAATTACCTATCTGGTTTCACCAAATTGACTGACAACCGTTACTCCATGAAAATGTGCTTTGAAATAAGGAAGCAGAAATATCTCGAAGCCTTGGACAGTAAGGAGAAGACAAGGGCTCTTGAAATACTGGGGAAGGATTTGAAAGTGTTCCAAACATACAATGAAGAATTATACAGAGAAATCACATATCTGTTAACCCTTGAAAACTTTAGGGATAATGAACAGTTATCAAAATATGGGGATACCAAAACAGCTAGGAAAACAATGATAGTAGAGCTTAAGAAACTGATTGAAGCAAATCCCCGTTTGAATGACAAGCTTGTATTTCCTTCATTGAAGCCATCAAGGTTACGAACACTTATTAATCAGAGTCTGAATTGGCAGCATCAGCTCTGCAAGAACCCAAAGCCAAATCCGGACATAAGGACTCTGTTCGTTGACCACACATGCTCTCCTCCCGGTCCGGCCGGTGCAAGCTCAAGCACGCCAAGGTCACCATCAGTCCCGGCAGCTGTTAATCCTTCTGCGGTTGCGGCTGCGACTGGGGCCGGGACGTCTGTTCCCCTGAACCAAACCTTAGTGTCTGCATTGAAGCATTCCAGGACACCACCTACTCCTATGAATAACGAGCAGCGAGGAAAACGGTTGCGATCTGTTCCACAAGCAACCGAGGCGACGAATTCTCTGGTGGTCCGTCAACAAGTCCCTCGGTCTCTTGACGACCTTACTAGAACGCTGTTTTGTACATTGAATCAAGGATCAACAGTTACAAGCATGGATTTTCATCCTTCTCTTCATTCCTCACTTCTTATCGGAACTGCAAGTGGTGAAATTTCATTCTGGGAAGTAGGACGCAATGAGAGGCCAATCTTAAAGCCTTTTGCCATTTGGAACAGTGCTACTTGCTCGGTCTTATTTCAGGCTGCGTATGCCAAAGACTCGAATGTATCCGTTTGCCGTGTATCATGGAGCGCTGACGGCAAATATCTTGGGGTTGCTTTCACAAAGCATTTGGTTCATCTGTATACTTATCAAGCACCTAATGACTTAAAAGAGCATTTGGAGGTTGATGCTCATGTTGGCAGTGTCAATGATTTGGCGTTTTCTTCCCCACACAAACAGCTATGCATGGTAACTTGCGGGGATGATAAGCTCATAAAGGTGTGGGACTTAACCGGACACAACCTGTTTAACTTCCAAGGTCACGAAGCAGCGGTTTATTCTATTTGTATGAATGTGAAGGAAAACGTTGAGTACATATTGTCAAGTAGTGTTGATGGAAAAATAAAGGCGTGGTTGTTTGATAACTCGGACACAAAAGTGGAATATGATGCCCATGGAAAATACTGCACCACAATGCTCTATAGCGCCGATGGAACTAAATTGTTTTGTTGCGGGACAAGTAAAAACAATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAATGATGGAGTTATAAAGAGAACCTATGCTGGATTAGGAAAGAAATCGATGGGCATGATGCAATTCGACACGACCAAGAATCGCTTCTTGGTTGCCGGCGAAGACAAGCTGATAAAGTTCTGGGAGCTGGACAACCCTAATATTCTAGCTAGTGTACAAGTTGATGGCAATTTATCTAGTGTTCCCCGGGTGAGGTTTAATAGGATAGGGAGTCTGCTTGCTGTAACCACCGCAGATGGCAGGGTAAAGATTTTTGCTAACGCCGACGGCATCAAGCACTTAAGGGCCATTCAAGCTTGGTCTTGCCGGGCTTCGTCCAAAGCGAATACCAATCCAGCCATGACTCATTTGGAACTCGGAGAGGGTAGCTCTGCTCGTAGATCTAAATCTTTTACGGAATTACCAGAAATACTTAAGTGTCAAATGATTACTCTGCCCGATACCATGTATCCCACAGCCAAGGTTGCTCGACTTGTCTACATGAATAACGGAGTTGGCCTTCTCGGTGTTGGTTCCGATGGGACTCAGAAGCTGTGGCGATGGAATCGAACTGAATTGAATCCTACTGGAAAGGCGATGGCAAGTGCTTGTCCAGTGCTTTGGCTACCAAATTCCGGTTTTGTCATGACAAACGATGTTCCAGAAAATTCAGAAGGCACAATTCCTTGTGCAATCATCTCAAAGAACGATTCTTATGTTTTGTCAGCATGCGGAGGAAAACTTACACTTTTCAACATGCTCTCATTTAAGGTAATGGTGAGTTTCATGTCGCCACCACCTCGTTCAACTTGCCTTGCATTTCACCCTCAAGATAATAACGTTGTTGCAATTGGAAAGGAAGATTCCTCCATCCATATTTACAACATTCAGTCGGAAGAGGTCAAAGCTAAATTGACTGGTGATGAGAAGTGCATCACTAGTTTAGCTTTTTCAATGCTGCTGGCTGTCTTAGTTTCATCAGATGCCGATGCTCAGATCTTCTTTTGGAGCATTGACACATGGAATTTGAAGAAATCATTGAAAATGTATTTGCGCGACGAAAGTCCAGTAACTGGCGATACTCAAGTGCAATTTCACTGTAATCAGATAAACTTGCTGGTATGCCACCGCGAGGTGCTAAGTCTATATGATGCATCAAGAATGGAACTGGTTATGCAGTGGGTTCCAAAGGCTCATATGTCTGGTTCCATATCATGTGCTACATACTCGGGCAATGGCAAATTGATCTATACTGCTCTTACCGATGGCAACATTGTAATATTTAATGCTGACACCTTGATGCTGCGATGTCGTATCGCTCCATCTGTTTACCTCATGACCCCAAACTTACCAAATAGCGAAAATGTGTATGCGGCTGTACTTGCAGCAAATCCACAGGAGCCGAATCAATTTGCAGTTGGACTGTCCAATGGAGCTATTAAGGTCATTGAGCCCCAAGCTTCTCGTCGAGGAAATAATGGTAGCTGGATGGGAAAATTTAAACGCGCGGGAAAACCGCCGCGCCACGGTGGCCGAGCATGCAGCAGTGCCATGGAGGAGACAGTGTCTGATGATGGAAACAGTGGTGCAAATACAATATAA 3186 0.4397 MSSLSRELVFLILQFFQEENLKDTIHKLQQESGYFFDMKYFEEKALNGEWEIVENYLSGFTKLTDNRYSMKMCFEIRKQKYLEALDSKEKTRALEILGKDLKVFQTYNEELYREITYLLTLENFRDNEQLSKYGDTKTARKTMIVELKKLIEANPRLNDKLVFPSLKPSRLRTLINQSLNWQHQLCKNPKPNPDIRTLFVDHTCSPPGPAGASSSTPRSPSVPAAVNPSAVAAATGAGTSVPLNQTLVSALKHSRTPPTPMNNEQRGKRLRSVPQATEATNSLVVRQQVPRSLDDLTRTLFCTLNQGSTVTSMDFHPSLHSSLLIGTASGEISFWEVGRNERPILKPFAIWNSATCSVLFQAAYAKDSNVSVCRVSWSADGKYLGVAFTKHLVHLYTYQAPNDLKEHLEVDAHVGSVNDLAFSSPHKQLCMVTCGDDKLIKVWDLTGHNLFNFQGHEAAVYSICMNVKENVEYILSSSVDGKIKAWLFDNSDTKVEYDAHGKYCTTMLYSADGTKLFCCGTSKNNGDSFLVEWNENDGVIKRTYAGLGKKSMGMMQFDTTKNRFLVAGEDKLIKFWELDNPNILASVQVDGNLSSVPRVRFNRIGSLLAVTTADGRVKIFANADGIKHLRAIQAWSCRASSKANTNPAMTHLELGEGSSARRSKSFTELPEILKCQMITLPDTMYPTAKVARLVYMNNGVGLLGVGSDGTQKLWRWNRTELNPTGKAMASACPVLWLPNSGFVMTNDVPENSEGTIPCAIISKNDSYVLSACGGKLTLFNMLSFKVMVSFMSPPPRSTCLAFHPQDNNVVAIGKEDSSIHIYNIQSEEVKAKLTGDEKCITSLAFSMLLAVLVSSDADAQIFFWSIDTWNLKKSLKMYLRDESPVTGDTQVQFHCNQINLLVCHREVLSLYDASRMELVMQWVPKAHMSGSISCATYSGNGKLIYTALTDGNIVIFNADTLMLRCRIAPSVYLMTPNLPNSENVYAAVLAANPQEPNQFAVGLSNGAIKVIEPQASRRGNNGSWMGKFKRAGKPPRHGGRACSSAMEETVSDDGNSGANTI* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0908 1061 Gene3D - 225 533 IPR015943 GO:0005515
Ahy4g0908 1061 Pfam LisH-like dimerisation domain 5 33 - -
Ahy4g0908 1061 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Ahy4g0908 1061 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 431 870 IPR011047 -
Ahy4g0908 1061 SUPERFAMILY WD40 repeat-like 298 486 IPR036322 GO:0005515
Ahy4g0908 1061 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 234 641 - -
Ahy4g0908 1061 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 656 1018 - -
Ahy4g0908 1061 MobiDBLite consensus disorder prediction 1018 1061 - -
Ahy4g0908 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 486 IPR001680 GO:0005515
Ahy4g0908 1061 ProSitePatterns Trp-Asp (WD) repeats signature. 431 445 IPR019775 -
Ahy4g0908 1061 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 251 IPR027728 GO:0006355
Ahy4g0908 1061 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 234 641 IPR027728 GO:0006355
Ahy4g0908 1061 SUPERFAMILY WD40 repeat-like 890 1014 IPR036322 GO:0005515
Ahy4g0908 1061 SMART ctlh 34 92 IPR006595 -
Ahy4g0908 1061 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 251 - -
Ahy4g0908 1061 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Ahy4g0908 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 833 874 IPR001680 GO:0005515
Ahy4g0908 1061 Gene3D - 534 660 IPR015943 GO:0005515
Ahy4g0908 1061 SMART WD40_4 403 444 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 446 487 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 580 621 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 783 823 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 537 577 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 353 397 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 915 957 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 490 534 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 826 865 IPR001680 GO:0005515
Ahy4g0908 1061 SMART WD40_4 297 336 IPR001680 GO:0005515
Ahy4g0908 1061 Gene3D - 684 1015 IPR015943 GO:0005515
Ahy4g0908 1061 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 656 1018 IPR027728 GO:0006355
Ahy4g0908 1061 Pfam WD domain, G-beta repeat 410 444 IPR001680 GO:0005515
Ahy4g0908 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 445 IPR001680 GO:0005515
Ahy4g0908 1061 SMART Lish 4 36 IPR006594 GO:0005515
Ahy4g0908 1061 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0908 Ahy-Chr4 16229035 16242426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0908 409 620 Miscellaneous Gene Families AT5G08390 24.186 9.37e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0908 - - ahf:112741705 2026.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1002 14 16793960 16806306 Ahy4g0908 4 16229035 16242426 hybridization