Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0857 ATGCTTTTTGTAAATGCAAAAAAAGAGACAAAAACATTACATGATGTAGGATCTGTATCTCCCAACCCAAGATCTGCTTCCCTTCTCAATCATCGTTCCTCAAACCTGCGATCTGTATCTTATTCCTTTTCCCTTTTTCACTTTCGGGTTTGGATCTCTCAAGACATGTTCCTCTTTGACTGGTTCTATGGCATTCTAGCCTCCCTCGGCCTTTGGCAAAAAGAAGCCAAGATTCTCTTCCTGGGTCTCGATAATGCCGGCAAGACCACCCTCCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCTACCCAACACCCCACTTCCGAGGAATTGAGCATTGGCAAGATCAAGTTCAAGGCTTTTGATTTGGGTGGCCACCAAGTTGCTCGCAGAGTCTGGAAAGACTACTATGCAAAGGTGGATGCTGTTGTTTATCTGGTAGACGCCTACGACAAGGAGAGGTTTGCAGAATCGAAGAAGGAGCTTGACGCGTTGCTTTCAGACGAAGCCTTGGCAAATGTTCCGTTTCTAGTGCTAGGAAACAAGATCGACATCCCATACGCAGCTTCGGAAGAGGAGCTACGATATCATCTCGGCCTGACAAATTTCACCACGGGCAAAGGCAAGATCAATCTCACGGATTCCAACCTTCGACCTCTCGAAGTGTTCATGTGCAGCATCGTCCGCAAGATGGGATACGGCGATGGCTTCAAGTGGGTCTCCCAATACATCAAGTAG 747 0.4699 MLFVNAKKETKTLHDVGSVSPNPRSASLLNHRSSNLRSVSYSFSLFHFRVWISQDMFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKINLTDSNLRPLEVFMCSIVRKMGYGDGFKWVSQYIK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0857 248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 247 IPR027417 -
Ahy4g0857 248 SMART arf_sub_2 59 224 - -
Ahy4g0857 248 PANTHER GTP-BINDING PROTEIN SAR1A 56 248 - -
Ahy4g0857 248 TIGRFAM small_GTP: small GTP-binding protein domain 74 193 IPR005225 GO:0005525
Ahy4g0857 248 CDD Sar1 57 247 - -
Ahy4g0857 248 PRINTS GTP-binding SAR1 protein signature 177 198 IPR006689 GO:0003924|GO:0005525
Ahy4g0857 248 PRINTS GTP-binding SAR1 protein signature 221 245 IPR006689 GO:0003924|GO:0005525
Ahy4g0857 248 PRINTS GTP-binding SAR1 protein signature 105 129 IPR006689 GO:0003924|GO:0005525
Ahy4g0857 248 PRINTS GTP-binding SAR1 protein signature 77 100 IPR006689 GO:0003924|GO:0005525
Ahy4g0857 248 PRINTS GTP-binding SAR1 protein signature 132 157 IPR006689 GO:0003924|GO:0005525
Ahy4g0857 248 ProSiteProfiles small GTPase SAR1 family profile. 69 247 - -
Ahy4g0857 248 ProSiteProfiles small GTPase Arf family profile. 69 247 - -
Ahy4g0857 248 Gene3D - 52 248 IPR027417 -
Ahy4g0857 248 PANTHER RE74312P 56 248 IPR006687 GO:0005525|GO:0006886
Ahy4g0857 248 SMART sar_sub_1 59 247 IPR006689 GO:0003924|GO:0005525
Ahy4g0857 248 Pfam ADP-ribosylation factor family 63 247 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0857 Ahy-Chr4 14351797 14354331 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0857 K07953 - gmx:100810637 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0954 14 15707392 15709426 Ahy4g0857 4 14351797 14354331 hybridization
Ahy11g2634 11 142587803 142590949 Ahy4g0857 4 14351797 14354331 PCT
Ahy1g2298 1 100902961 100905930 Ahy4g0857 4 14351797 14354331 PCT
Ahy4g0857 4 14351797 14354331 Ahy11g2634 11 142587803 142590949 PCT
Ahy4g0857 4 14351797 14354331 Ahy1g2298 1 100902961 100905930 PCT