Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0842 ATGGCGGAGAAGTACAACATGAAGAACCCCGCCGTCAAGCGCATTCTCCAAGAGGTCAAGGAGATGCAGTCCAATCCTTCCGATGATTTCACGAGTCTCCCTCTCGAGGAAAATATATTTGAATGGCAATTTGCAATTAGAGGACCTCGTGATACTGAATTTGAGGGTGCTGTCTATCATGGACGGATCCAATTGCCTTCAGAGTATCCATTCAAACCACCTTCATTTATGTTATTGACGCCTAATGGACGTTTCGAGACCCAAACAAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGTGTAAGGACCGCTTTAGTTGCTCTGATTGCATTCATGCCTACCAACCCTAATGGTGCTTTGGGGTCGTTGGACTACAAGAAGGAAGAAAGGCGTACCTTGGCCATCAAATCTCGTGAAGCGCCTCCGAAATTTGGGACTCCTGAACGTCAAAAACTGATTGATGAGATACACGAGTATATGCTAAGCAAGGCACCCCCTGTTCCTCAACATAGCTCCATACAACTACTCGAAGAAGAGCATTCCAGAGACGAGGAGGCTGAGTCCCAGGCAAATTCCCATAATCCTGAGGCTTTACCTGCTGAAGAGGGGATTCCAGATCAAGCAGGAGATAGAATTGTTGAAGAGGAGGTAGTTGTTGATGATAATCTTCAAGGAGTTGAAGCTTCAACGGAGATCCAATCCAATGTTTCAAGGAACCAGTCGCCCCATAATTCTGGTTTAAGGGTTCAAAATCCGAAGCCGGAGACTAGGATACAGCAAAAGCTTGATGATCATATTTTCACATTGATAGCCATTGGACTTGCCATTGCAATTGTGGCCCTTTTGCTGAAGAAGTTCGTTAAATCTTCCGATCAAGGACCAGTTTTCATGGATGGGTCTTAG 927 0.452 MAEKYNMKNPAVKRILQEVKEMQSNPSDDFTSLPLEENIFEWQFAIRGPRDTEFEGAVYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQHSSIQLLEEEHSRDEEAESQANSHNPEALPAEEGIPDQAGDRIVEEEVVVDDNLQGVEASTEIQSNVSRNQSPHNSGLRVQNPKPETRIQQKLDDHIFTLIAIGLAIAIVALLLKKFVKSSDQGPVFMDGS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0842 308 Gene3D Ubiquitin Conjugating Enzyme 1 173 IPR016135 -
Ahy4g0842 308 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Ahy4g0842 308 MobiDBLite consensus disorder prediction 184 198 - -
Ahy4g0842 308 PANTHER BNAC01G21910D PROTEIN 6 308 - -
Ahy4g0842 308 CDD UBCc 12 151 IPR000608 -
Ahy4g0842 308 MobiDBLite consensus disorder prediction 239 261 - -
Ahy4g0842 308 MobiDBLite consensus disorder prediction 184 215 - -
Ahy4g0842 308 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 308 - -
Ahy4g0842 308 SMART ubc_7 13 173 - -
Ahy4g0842 308 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Ahy4g0842 308 SUPERFAMILY UBC-like 11 133 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0842 Ahy-Chr4 13895115 13898284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0842 3 306 Miscellaneous Gene Families AT3G17000 61.165 4.41e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0842 K10578 - gmx:100798396 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0935 14 15403643 15407051 Ahy4g0842 4 13895115 13898284 hybridization