Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0830 ATGGCAACTGGGCAACTATTCTCCCGAACTACACAAGCATTGTTTTACAACTACAAGCAACTGCCCATCCAGCGGATGCTTGATTTCGACTTTCTTTGTGGAAGGGAAACACCATCAGTAGCTGGAATAATTAATCCTGGCTCTGAGGGATTTCAGAAGCTTTTTTTTGGTCAGGAAGAAATTGCAATCCCGGTTCATGCTAGCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGAAGTGCTGCCGCATCGTCCATGTCTGCTTTGAAGCAACCAACAGTTAGAGTTGTTGCTATAATTGCTGAAGGAGTACCCGAATCAGACACTAAGCAATTGATTGCGTATGCCAGGGCAAACAATAAGGTTGTTATTGGTCCGGCCACTGTTGGAGGCATTCAAGCCGGTGCATTTAAAATTGGTGACACAGCTGGAACAATTGATAATATAATTCACTGCAAGCTCTACAGGCCCGGATCTGTTGGATTTGTTTCTAAATCTGGTGGAATGTCTAACGAATTATACAACACTATTGGCCGTGTATCTGATGGAATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTCCCTGGTTCCACTCTTTCTGATCATGTTTTGCGGTTTAACAATATACCACAGGTTAAAATGATAGTAGTACTTGGGGAGCTTGGTGGCCGAGATGAGTATTCCCTAGTTGAAGCCCTAAAACAAGGAAAAGTAACAAAACCAGTTGTTGCCTGGGTTAGTGGAACCTGTGCAAGACTCTTCAAATCTGAAGTGCAATTTGGTCATGCTGGAGCTAAGAGTGGGGGTGAGATGGAGTCTGCCCAAGCAAAAAATCAGGCACTAAAGGATGCTGGAGCTGTTGTTCCCACTTCATATGAAGCTTTGGAAGCTGCAATTAAAGAGACATTTGACAAATTGGTTGAAGAAGGAAAGATCACGCCAGTGAAGGAGATTACTCCTCCACCAATCCCTGAGGACCTAAACTCTGCAATCAAGAGTGGAAAAGTCCGAGCTCCTACTCATATCATTTCCACCATTTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTGTCGAAAAAGGTTTTGGTGTGGGTGATGTTATCTCTCTTTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCAATTTATTGAGATCTGCATCATGCTATGTGCCGACCATGGTCCCTGTGTCTCAGGTGCTCACAATACTATTGTGACAGCAAGGGCTGGGAAGGACCTAGTTTCCAGTCTTGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGAGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGATAGGGGCCTTACACCTTATGAATTTGTAGAAAATATGAAGAAGAAGGGCATTCGTGTGCCAGGAATAGGGCACAGGATCAAGAATCGTGACAACAAGGATAAGAGAGTTGAACTGCTACAGAAGTTTGCACGGACTCATTTTCCTTCCGTGAAATACATGGAATATGCTGTTCAAGTTGAAGCCTACACCCTTACAAAGGCAAATAATCTAGTTCTTAATGTAGACGGTGCGATTGGGTCCCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAGCAAGAGATTGATGAAATTGTGGAGATCGGCTATCTGAATGGTCTCTTTGTTCTGGCACGCTCCATAGGTCTGATTGGGCACACCTTTGACCAAAAGAGATTGAAGCAGCCGCTCTATCGCCACCCATGGGAGGATGTTCTCTACACAAAGTGA 1827 0.4423 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHASIEAACAAHPTADVFINFASFRSAAASSMSALKQPTVRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIGRVSDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALKDAGAVVPTSYEALEAAIKETFDKLVEEGKITPVKEITPPPIPEDLNSAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEKGFGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVENMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVEAYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0830 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Ahy4g0830 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Ahy4g0830 608 Pfam CoA-ligase 174 298 IPR005811 GO:0003824
Ahy4g0830 608 Gene3D - 138 323 IPR016102 -
Ahy4g0830 608 PANTHER ATP-CITRATE SYNTHASE 1 608 - -
Ahy4g0830 608 CDD CCL_ACL-C 369 606 - -
Ahy4g0830 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0046912
Ahy4g0830 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Ahy4g0830 608 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 608 - -
Ahy4g0830 608 Gene3D - 450 547 IPR016143 -
Ahy4g0830 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
Ahy4g0830 608 Gene3D - 2 137 - -
Ahy4g0830 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0830 Ahy-Chr4 13105053 13111206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0830 1 608 Acyl Lipid Metabolism Gene Families AT3G06650 93.421 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0830 K01648 - gmx:100795745 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0918 14 14869323 14875865 Ahy4g0830 4 13105053 13111206 hybridization
Ahy11g2654 11 142764213 142769264 Ahy4g0830 4 13105053 13111206 PCT
Ahy1g2282 1 100774051 100779108 Ahy4g0830 4 13105053 13111206 PCT
Ahy4g0830 4 13105053 13111206 Ahy11g2654 11 142764213 142769264 PCT
Ahy4g0830 4 13105053 13111206 Ahy1g2282 1 100774051 100779108 PCT