Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2470 ATGTTAACATACCAACATCTAAAGTCTAAACTCGGCATCTGTTCTCCGAGAAAACCTCAGGTCATGGATACATTGTTATTGTTACTACTAGTTCTTATGTTTGTTCCACCAAGTCTAAACATGGTAGAGAGTCGCAAGGCTCCAATTTCGGACTACTTTGAGTACAGTGCTGTTAACTGCAGAGCTTACAGTGCATCGCTCACAGATTTTGGTGGTGTTGGGGATGGAACAACTTTGAACACAAAGGCTTTTCAATCAGCCATAGATCATATGAGCCAGTTCTCATCAACTGGAGGCTCTCAACTCTTTGTTCCTCCCGGAAGATGGTTAACCGGTAGCTTCAATCTCACTAGCCACTTCACTCTATTCCTACACCAAGATGCTGTCATCCTTGCCTCTCAGGATGAGAGTGACTGGCCACTCATTGATCCCTTGCCGTCTTACGGCCGAGGGAGGGATGCGCAAGGTGGAAGGTATAGCAGTCTAATTTTTGGAACCAACCTTACAGATGTGATCATCACTGGGGACAATGGTACAATAGATGGACAAGGCGATGTTTGGTGGAAAAAATTCCACAAGGGTGATCTCAGTTATACTAGGCCTTACCTTATTGAAATAATGTATTCAGAGAATGTTCAGATATCTCATCTAACTTTGGTCAATTCTCCTTCATGGAATGTTCATCCTGTATATAGCAGCAATATTGTTGTTCAAGGCATCACAATACTTGCTCCAGTTAATTCACCAAATACTGATGGAATCAACCCTGACTCATGCACAAACACAAGAATTGAGGACTGCTACATTGTTTCTGGGGATGATTGTGTGGCGGTTAAGAGTGGTTGGGATGAGTATGGTATAGCATATGGAATGCCAACGAAACAACTAGCAATCCGGCGCCTGACGTGCATTTCACCAACCAGCGCTGTGATAGCGTTGGGGAGTGAAATGTCCGGTGGGATTGAGGATGTGAGGGCTGAGGACATTGTAGCCATCAACTCAGAATCAGGTGTTAGGATCAAAACTGCTGTAGGAAGAGGAGGCTATGTTAAGGACATATATGTGAGAAGGATGACTATGAGTACCATGAGATGGGCATTTTGGATGACAGGAAATTATGGTTCTCATGCTGACAACAACTATGATCCCAATGCACTTCCTCTCATTCAGAACATCAATTACCGGGACATGGTTGCTCAGAATGTGACTATGGCAGCAAGATTGGAGGGTATATCCAATGCTCCATTCACTGGCATATGTATATCCAATGTGACTATTCAACTATCAAAGAAACCTTACAAAGTTCAATGGAATTGCACCAATGTGGCTGGGATTTCTAGTGGTGTGACTCCAGAGCCATGTATGCTGTTGCCAGATCAGGGACCGGAGAAGATTGGGGTATGTACCTTCCCAGAAGATGGTTTGCCCATCGATGATGTCAAGTTCCAAACTTGCACTTATGCAAGGCATTTATGA 1476 0.4383 MLTYQHLKSKLGICSPRKPQVMDTLLLLLLVLMFVPPSLNMVESRKAPISDYFEYSAVNCRAYSASLTDFGGVGDGTTLNTKAFQSAIDHMSQFSSTGGSQLFVPPGRWLTGSFNLTSHFTLFLHQDAVILASQDESDWPLIDPLPSYGRGRDAQGGRYSSLIFGTNLTDVIITGDNGTIDGQGDVWWKKFHKGDLSYTRPYLIEIMYSENVQISHLTLVNSPSWNVHPVYSSNIVVQGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLAIRRLTCISPTSAVIALGSEMSGGIEDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMSTMRWAFWMTGNYGSHADNNYDPNALPLIQNINYRDMVAQNVTMAARLEGISNAPFTGICISNVTIQLSKKPYKVQWNCTNVAGISSGVTPEPCMLLPDQGPEKIGVCTFPEDGLPIDDVKFQTCTYARHL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2470 491 Gene3D - 49 448 IPR012334 -
Ahy3g2470 491 PANTHER PECTIN LYASE-RELATED 26 488 - -
Ahy3g2470 491 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 26 488 - -
Ahy3g2470 491 SUPERFAMILY Pectin lyase-like 59 484 IPR011050 -
Ahy3g2470 491 Pfam Glycosyl hydrolases family 28 160 443 IPR000743 GO:0004650|GO:0005975
Ahy3g2470 491 SMART pbh1 350 371 IPR006626 -
Ahy3g2470 491 SMART pbh1 232 258 IPR006626 -
Ahy3g2470 491 SMART pbh1 321 342 IPR006626 -
Ahy3g2470 491 SMART pbh1 259 280 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2470 Ahy-Chr3 107519878 107522173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2470 53 490 Glycoside Hydrolase AT4G23500 75.114 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2470 - - gmx:100785841 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2801 13 109999449 110001671 Ahy3g2470 3 107519878 107522173 hybridization