Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2459 ATGGGAGTCATGAGCAAGGAGCAATCCCAATTGTTGTCAAAGATAGCCACCGGCAACGGTCATGGCGAAGACTCACCTTACTTTGACGGGTGGAAGGCTTATGATGAAAACCCTTATCACCCGACCAATAATCCTCACGGTGTTATCCAAATGGGTCTTGCAGAGAATCAGTTAACTGCTGATTTGGTTGAAGAATGGGTGATGAGTAACCCGGAGGCGTCCATTTGCACACCTGAAGGAGTAACTGACTTCAAAGCCATAGCTAACTTTCAGGATTATCATGGTCTCCCAGAGTTCAGAAAAGGTGTGGCTAAATTCATGGCTAAAAGCAGAGGCAACAGAGTGAAGTTTGAGGCAGAGAGAATTGTGATGAGCGGTGGAGCCACCGGAGCACACGAGGTGACAACGTTCTGTTTGGCTGACCCCGGCGATGCCTTCTTGGTGCCTACTCCCTACTATCCAGGTTTTGATAGGGATTTGAGGTGGCGAACAGGGGTACAACTCGTTCCAGTCAAATGTGAAAGCTCCAATAATTTCAAGTTGACAAAGCAAGCCTTGGAAGATGCTTACGACAAAGCTCGACAAGACAACATCAGAGTCAAAGGCTTACTCATTACGAACCCGTCAAACCCATTAGGCACAATCTTGGACCGAGCCACCCTTAGAACCATCGTCAAATTCATCAACGATAAGCGCATCCACTTAGTATGCGACGAAATCTACGCCGCCACGGTTTTCAGCCACCCGGGCTTCATAAGCATCGCTGAGATATTGGAGGAAGAAACAGACATGGAATGCGACCGTGACCTCGTTCACATTGTTTATAGCCTCTCCAAGGACATGGGCTTCCCTGGTTTCAGGGTGGGGATCATATATTCCTACAACGACAAGGTTGTCCAGTGCGCACGCAAGATGTCCAGCTTCGGATTGGTGTCTTCACAAACTCAGCATCTGCTGGCTTCCATGCTCAACGACGATGAGTTCGTGGGGAGGTTCCTTGCGGAGAGTGCAAAGAGGTTGGGAGAAAGGTACAGGGTTTTCACAAAGGGATTGGGTCAAGTTGGAATTAAGTGTTTGCCAAGTAATGCTGGGTTGTTCTTGTGGATGGATCTTCGTCGGCTTCTAAAGAAGGCAACATTTGAGGCTGAGATGGAGCTGTGGCGAGTCATCATTCACGAAGTTAAGATCAATGTTTCTCCCGGTGCTTCTTTTCATTGCTCTGAGCCAGGCTGGTTCAGGGTGTGCTATGCCAACATGGATGATGAGGCTGTTAAGGTTTCTCTTCAGAGGATTCACACCTTCGTCCTTAAGAACAAGGATGTCGTTGTTCCTGATAAGAAGCGTTGCTGGCAAGATAGCTTGAGGCTTAGCCTCATCAAGAACCGAAGGTTTGATGATATCATCATGTCACCTCACTCACCGATCCCTCACTCGCCCCTTGTCAATGCTACCAACTGA 1458 0.4822 MGVMSKEQSQLLSKIATGNGHGEDSPYFDGWKAYDENPYHPTNNPHGVIQMGLAENQLTADLVEEWVMSNPEASICTPEGVTDFKAIANFQDYHGLPEFRKGVAKFMAKSRGNRVKFEAERIVMSGGATGAHEVTTFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVKCESSNNFKLTKQALEDAYDKARQDNIRVKGLLITNPSNPLGTILDRATLRTIVKFINDKRIHLVCDEIYAATVFSHPGFISIAEILEEETDMECDRDLVHIVYSLSKDMGFPGFRVGIIYSYNDKVVQCARKMSSFGLVSSQTQHLLASMLNDDEFVGRFLAESAKRLGERYRVFTKGLGQVGIKCLPSNAGLFLWMDLRRLLKKATFEAEMELWRVIIHEVKINVSPGASFHCSEPGWFRVCYANMDDEAVKVSLQRIHTFVLKNKDVVVPDKKRCWQDSLRLSLIKNRRFDDIIMSPHSPIPHSPLVNATN* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2459 485 CDD AAT_like 89 432 - -
Ahy3g2459 485 Coils Coil 176 196 - -
Ahy3g2459 485 Gene3D - 71 325 IPR015421 GO:0003824
Ahy3g2459 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Ahy3g2459 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Ahy3g2459 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Ahy3g2459 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Ahy3g2459 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Ahy3g2459 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Ahy3g2459 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Ahy3g2459 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Ahy3g2459 485 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
Ahy3g2459 485 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Ahy3g2459 485 SUPERFAMILY PLP-dependent transferases 21 434 IPR015424 -
Ahy3g2459 485 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Ahy3g2459 485 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 446 - -
Ahy3g2459 485 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2459 Ahy-Chr3 106820170 106822318 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2459 K20772 - gmx:100037458 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2790 13 108588991 108591197 Ahy3g2459 3 106820170 106822318 hybridization
Ahy5g1571 5 41647366 41649613 Ahy3g2459 3 106820170 106822318 PCT