Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0547 ATGCCATCGCCTCTCTCCTTCTCACCCCTCAACAAGCTCAAGCGCTTCAAATCCCTCAAGCTCTGCATTTCAAAGTCCCTCCTCAACGCCCCTTCCCTCTACGACGCCGTTTCATCTCTCGATCACTTCCACCCTAAGGGCATTCGCTTACCTTCTCGTGTTCTCGCCATCCTCTTGCGCCATTGCTCCGCCTCCAAATCCTACCGTGAGGGAAAATTGGTCCATTTGCATCTCAAGCTCACCGGTTTCAAACGCCCCACTACGTATTTGGCCAACCATTTGATCTGTATGTACTTTAGTTGCGGCGATTTTGTTAGTGCCCGCAAGGTGTTCGACAAAATGGAGGCTAGAAATTTGTACTCTTGGAACAATATGATTTCTGGGTATGTGAAATTGGGCATGATGAAGCAGGCTCGGGGTGTGTTTGATAGAATGCCTGAGAGGGATTTCGTGTCGTGGAATACGATGATTGTTGGGTATGCGCGTAATGGGGTGTTTGGTGAGGCTCTGAGGTTTTATGGGGAGTTGAGGAGATTGTGTATTGGGTATAATGGGTTTAGTTTTGCAAGTGTGTTGATTGTTTGTGTGAAGATGAAGGACTTTGAGCTTTCTAGGCAGGTTCATGCGCAGGTTTTGGTTGTTGGATTTTTGACCAATGTAGTTGTATCCAGCTCGATTGTTGACGCTTATGCAAAGTGTGGGAAGATGAAGGAGGCGAGGAGATTGTTTGACGAGATGCCCGTGAGGGATATCCCTGCTTGGACAACACTAGTTTCGGGTTATGCAGCATGTGGGAACATGGAATCAGCTGCTGAAGTTTTTTGTGAGATGCCACAGAAGAATTCTTATTCATGGACATCGCTGATCGGAGGTTATGCTAGAAACGGTATGGGTCATGAAGCTCTTCGAGTGTTTAGAAAGATGATGCAGCATCGAGCTAGACCTGATAAGTATACATTTCATAGTTGCTTCTTGGCTTGTGCTATAATTGCTTCATTGAAACATGGTAAACAATTACATTCATATTTGGTGCAAAATAACATCAGACCTAATACTGTTGTTGTTAGTGCTATTATTGACATGTATTCAAAATGTGGAACTTTAGAAACTGCCAAGAAAGTGTTTAATATAAATGGAAATAAGCAAGATGTAGCATTGTGGAACTCAATGATATCGGCGCTGGCTTACTGTGGCTATGGTATAGAAGCAATTATGATGCTAAACGATATGCTAAGATCAGGAGTGAAGCCAGACAAGGCCACTTTTGTTTCAATTCTTAATGCTTGCAGTCACTCAGGTCTTGTGCAGGAAGGGCTTCAGTTTTTCATGTCCATGACTAGTGAGCATGGTGTTGTCCCAGACCAAGAACACTATGCATGCTTAGTTAATCTTTTGCATCGCGCTGGATGCTTTAATGAATCAGGGAATGATCTACAAGTGATGGATCACAAGCCAGGTGAGCATGTTGAGAATAGTTCGCATGATCTATCGAGAAAGCTTGAAAGTACAAAACTTGAAAGAGAAGTACATAAATTCCCTATTAGATTGCAGCTTCAATCCACTGCTGCTTACTTGTTACTTTCAAGTGTGTATGTTGCACTCGTTAAAAGGGGGTCTCTTGAGAAAATGAGACAGATTATGCATGAGCAATGTTTTAGGCTCAATCAAGCCGTCACTTGA 1680 0.4333 MPSPLSFSPLNKLKRFKSLKLCISKSLLNAPSLYDAVSSLDHFHPKGIRLPSRVLAILLRHCSASKSYREGKLVHLHLKLTGFKRPTTYLANHLICMYFSCGDFVSARKVFDKMEARNLYSWNNMISGYVKLGMMKQARGVFDRMPERDFVSWNTMIVGYARNGVFGEALRFYGELRRLCIGYNGFSFASVLIVCVKMKDFELSRQVHAQVLVVGFLTNVVVSSSIVDAYAKCGKMKEARRLFDEMPVRDIPAWTTLVSGYAACGNMESAAEVFCEMPQKNSYSWTSLIGGYARNGMGHEALRVFRKMMQHRARPDKYTFHSCFLACAIIASLKHGKQLHSYLVQNNIRPNTVVVSAIIDMYSKCGTLETAKKVFNINGNKQDVALWNSMISALAYCGYGIEAIMMLNDMLRSGVKPDKATFVSILNACSHSGLVQEGLQFFMSMTSEHGVVPDQEHYACLVNLLHRAGCFNESGNDLQVMDHKPGEHVENSSHDLSRKLESTKLEREVHKFPIRLQLQSTAAYLLLSSVYVALVKRGSLEKMRQIMHEQCFRLNQAVT* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0547 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Ahy3g0547 559 Gene3D Tetratricopeptide repeat domain 25 179 IPR011990 GO:0005515
Ahy3g0547 559 PANTHER - 32 138 - -
Ahy3g0547 559 PANTHER - 129 262 - -
Ahy3g0547 559 PANTHER - 184 281 - -
Ahy3g0547 559 PANTHER - 32 138 - -
Ahy3g0547 559 PANTHER - 129 262 - -
Ahy3g0547 559 PANTHER - 261 550 - -
Ahy3g0547 559 PANTHER - 184 281 - -
Ahy3g0547 559 TIGRFAM PPR: pentatricopeptide repeat domain 421 454 IPR002885 -
Ahy3g0547 559 TIGRFAM PPR: pentatricopeptide repeat domain 283 316 IPR002885 -
Ahy3g0547 559 TIGRFAM PPR: pentatricopeptide repeat domain 92 119 IPR002885 -
Ahy3g0547 559 TIGRFAM PPR: pentatricopeptide repeat domain 225 251 IPR002885 -
Ahy3g0547 559 TIGRFAM PPR: pentatricopeptide repeat domain 253 279 IPR002885 -
Ahy3g0547 559 TIGRFAM PPR: pentatricopeptide repeat domain 386 418 IPR002885 -
Ahy3g0547 559 TIGRFAM PPR: pentatricopeptide repeat domain 151 179 IPR002885 -
Ahy3g0547 559 TIGRFAM PPR: pentatricopeptide repeat domain 120 151 IPR002885 -
Ahy3g0547 559 Gene3D Tetratricopeptide repeat domain 210 279 IPR011990 GO:0005515
Ahy3g0547 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Ahy3g0547 559 Pfam PPR repeat family 280 327 IPR002885 -
Ahy3g0547 559 Pfam PPR repeat family 383 430 IPR002885 -
Ahy3g0547 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Ahy3g0547 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Ahy3g0547 559 Gene3D Tetratricopeptide repeat domain 280 378 IPR011990 GO:0005515
Ahy3g0547 559 Gene3D Tetratricopeptide repeat domain 379 557 IPR011990 GO:0005515
Ahy3g0547 559 PANTHER - 261 550 - -
Ahy3g0547 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 453 IPR002885 -
Ahy3g0547 559 Pfam PPR repeat 224 250 IPR002885 -
Ahy3g0547 559 Pfam PPR repeat 120 149 IPR002885 -
Ahy3g0547 559 Pfam PPR repeat 151 179 IPR002885 -
Ahy3g0547 559 Pfam PPR repeat 92 118 IPR002885 -
Ahy3g0547 559 Pfam PPR repeat 354 376 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0547 Ahy-Chr3 5721370 5723049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0547 136 550 Glycoside Hydrolase AT3G49170 28.776 1.87e-63 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0547 - - lja:Lj3g3v3500060.1 713.375