Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2401 ATGGAAATGGGAAGGGGAAACGGCAGAGAACATTCCCCGCCAAAAATGGCGGCAGAGAGCAACGACATTGAAATCCAAGTCCGAACCCTAACCGCCGAATCCATCACTATCCCAATCCCTGCTTCCGCAACCGTACAACGCCTCAAGCTTCTCCTCAACCATTCATTCCCACCCGCCACCAACTCCTCCCATTTCCACCTTTTCTTCAAGGGTGAGAAATTGAGACCGCAGGCTCAGATTGGATCTTACACAATCCACAATGGGGAGTTTCTTGTACTCGTTCCATTTGCTAAGAAGGATTCCAAAGCTCACAAATCGGACTCACTTAATGCTTCTTCAACTCCCTCTAATGCTGCTCGTCGTGGTGATTCAGCTACCGATCTCGCGGATTCAATGTGGTCTAATATAAAGGAGGATCTATTGCATTTGCGCGAGGCCACTGAAAGTGATACTTTGGACCACAATAATAGCTCTGATTTCGAGTTCAGGACAGTTGCTTCGGAGCCAAGAAAAGAGAAAGTGGATGATGAGGTCAGTTGGAATCAGGCTTCGAAGGCAAATGACAGAGATGCTGATAACCGGATTGAGCTTCCATATCATCTCATATTGAACACACTGGAGTGTACCAGTGAGGGTGCCCTCGGCAAGCATAATTGCGAGGTCTTTTTGAAGGTTTTGGACTCCGTGAATTGTTTGTCAGACCTGCCTCTGGGACACTGCAAGTTGTTCAGAAGAGCTTGTTCACTGGGAGGTGATGGTGGATTGCAGCTAGGTGCCAATGGTAGTAGTAGTTCATGCTTGTGTCCTGCATGGTTGAAGATTGTAATGAAAGCATTTGCTTTCATAAACATCTTGTCCGGGTTTCTTCATTTGCAGGGTAGGAAAATGACCTTGCGTCTGCTGGAAGAAGCGTTGAATGAGCTTGGAATGTTCGGAGTCAAAATTGGCCTCCAGGACGTGAAGCATCTTCCGCTTCTCTCACCTCAACTAGTGTGCTTCGAAAGTGACATAGAGAAGGCAAGTTTTGGCAATGTCATTTTTGTCATTAACCATTCATCAAGTGATGAAGAACAAATTGAAATCAATCCTAAAACAGCTCTATCAAAGATTGTTCGGACATTGAAGAGTAGGGATAGTTCTTTCCGAAATAATCTGTGGAAGGCTTTTGAGCAGCTTCCGTTTATTTCAGGAGATCAGCTGACTATGGGAATTTCCTTGGAAGAATTGCTTGCAATATGCAAAGACCAATATTTTGTTGTAAATGAAAACAAATCAAAACGTTTAAAGAGAAGCTTGAATACCACAAAACCTGATTCAAATCACATTCGGTGTCATGACACAAAGGCATTGCTAGCTGTGGACATGGTTGAACACCTTGAGAAAGGAATTGGATCTGAAGGACAGATTGTGCATATTGAAGACATAAGCCCTAGAAATGCCATTCATGCGGAGATCCCAACTGAACTATCGGAAAAGATGAGATCAGCACTGAAGTGTATAGGAGTTTCAAAATTGTATAGTCACCAGGCAGAGTCTATACAAGCCTCCCTTCATGGGAAGAATGTTGTTGTGGCTACAATGACATCTAGTGGCAAATCTCTTTGCTATAACCTGCCAGTTCTAGAAGTTTTACTGAATAATCTGTCATCATGTGCTCTTTACATATTTCCTACAAAGGCATTAGCTCAAGATCAACTAAGATCTTTGTTAAACATGACAAAAGGATTTGATGTTGAGTTAAATATTGGTATATATGATGGTGACACTTCCCAAAGAGACAGGACTTGGCTACGAGATAATTCTAGACTGTTGATAACAAATCCAGATATGTTACACATATCGATCTTGCCCCACCATCGTCGATTTAGTCGGATTTTATCAAATCTAAGGTTTGTGATAATTGATGAAACTCATACTTACAAGGGAGCATTTGGATGTCATACTTCGCTTATATTAAGGAGGCTCAGGCGACTGTGCTCACATGTATATGGATCTGATCCTTCCTTTGTTTTTTCTACTGCAACTTCTGCTAATCCAAGCGAGCATTCTATGGAACTTGCAAATTTACCAGCACTTGAGCTATTTCAGAATGATGGAAGTCCATCTGCAAGGAAACTTTTCATCCTTTGGAATCCTAGTCTGCGTCCGAAAGCTATGGTGAAAAAAGCCAAGTCTGTTATCGATGCTGATAATTTGGAAGACGAAAGTGACAATTTTGTTCGTTCAAGCCCAATTGTGGATGTTTCGCGCCTTTTTGCAGAAATGGTTCAGCATGGTCTTCGCACCATCGCTTTTTGTAAATCAAGGAAACTTTGTGAGCTTGTTTTATCATATACACGTGAAATTCTTCTCGAAACATCCCCGCATCTGGTTCATTCCATCTGTGCATATCGTGGTGGCTACATCGCAGAGGAAAGAAGAAAAATAGAGACTGCATTTTTTGGTGGTAAAATTTGTGGTGTTGCTGCAACTAATGCTCTTGAATTGGGCATTGATGTTGGAGAAATTGATGTGACTCTGCATCTAGGATTTCCTGGTAGTATTGCAAGCTTGTGGCAACAAGCCGGTAGGGGCGGGAGGAGAGATAGGCCTTCTCTTGCTGTCTATGTTGCCTTTGGTGGGCCTCTTGATCAGTACTTCATGAAACACCCTAAGAAACTTTTTGAAAGGCCAATTGAATGCTGTCACATTGATTCCCAAAACAAGCAGGTTCTCGAACAGCATTTGGCCTGTGCAGCTCATGAACACCCTCTTGTTGTGCAGTATGATGAGAAGTATTTTGGTTCTTGCTTAGAGAATGTTTTAAATTCTTTAAACGCTAGAGGATATTTGAGTCCTAATCAGTCATTTGATTCTTCTTCTAGAATTTGGAACTACATTGGTCCTGAGAAATATCCTTCTCATGCGGTCAATATCCGAGCAATAGAAACCGTAAGATACAGTGTCATAGATCAGAGAAAAAATGAAGTCCTTGAAGAGATAGAGGAAAGCAGGGCTTTCTTTCAGGTATATGAAGGTGCTGTGTACATGTGTCAAGGGAAAACCTATTTGGTCGAGAAATTAGATCTGTCTAGCAAGACCGCTTTCTGCAAAGTGGCTGATCTGAAGTATTATACAAAAACTCGAGATTACACCGATATTCATGTCACTGGGGGTAATATTGCTTATCCTACAGCAGTTTTGAACATGTTTCCTAAAACAAATGCACGGGCTCATATATGCAAAGTAACAACTACATGGTTTGGTTTTTATCGTATTTGGAGAGGGAGCAATCAAATCTTTGATGCTGTTGACCTAGCCCTTCCTCAATATTCATACGAGTCACAGGCAGTTTGGATTCCAGTGCCACAATCTATCAAAGAAGTAGTACTCAAGAAAAATTATGATTTTCGTGGAGGTTTGCATGCTGCTTCGCATGCGGTTTTAAATGTAGTGCCTTTACATATAACATGCAACTTATCTGACTTGGCTGCCGAGTGCCCGAATCCTCATGATAGCCGCTATTACCCAGATCGAATTCTCATTTATGATCAACATCCTGGAGGGTGTGGGATTTCAGTTCAGGTTCAACCGCGTTTCACCAAGTTCCTGGAAGCTGCACTTGATCTTCTCACTTGTTGCCGCTGCTCAGCGGAAGTTGGTTGCCCTAATTGTGTTCAGAGTTTTGCTTGCAATGAGTATAACGAGGTCCTACACAAGGATGCGGCCATTATGATTATCAAGGGTGTTCTGGAAGCAGAAAATGTGATCAATGCTGAGGAGTCACCTTTTTTATGA 3777 0.4215 MEMGRGNGREHSPPKMAAESNDIEIQVRTLTAESITIPIPASATVQRLKLLLNHSFPPATNSSHFHLFFKGEKLRPQAQIGSYTIHNGEFLVLVPFAKKDSKAHKSDSLNASSTPSNAARRGDSATDLADSMWSNIKEDLLHLREATESDTLDHNNSSDFEFRTVASEPRKEKVDDEVSWNQASKANDRDADNRIELPYHLILNTLECTSEGALGKHNCEVFLKVLDSVNCLSDLPLGHCKLFRRACSLGGDGGLQLGANGSSSSCLCPAWLKIVMKAFAFINILSGFLHLQGRKMTLRLLEEALNELGMFGVKIGLQDVKHLPLLSPQLVCFESDIEKASFGNVIFVINHSSSDEEQIEINPKTALSKIVRTLKSRDSSFRNNLWKAFEQLPFISGDQLTMGISLEELLAICKDQYFVVNENKSKRLKRSLNTTKPDSNHIRCHDTKALLAVDMVEHLEKGIGSEGQIVHIEDISPRNAIHAEIPTELSEKMRSALKCIGVSKLYSHQAESIQASLHGKNVVVATMTSSGKSLCYNLPVLEVLLNNLSSCALYIFPTKALAQDQLRSLLNMTKGFDVELNIGIYDGDTSQRDRTWLRDNSRLLITNPDMLHISILPHHRRFSRILSNLRFVIIDETHTYKGAFGCHTSLILRRLRRLCSHVYGSDPSFVFSTATSANPSEHSMELANLPALELFQNDGSPSARKLFILWNPSLRPKAMVKKAKSVIDADNLEDESDNFVRSSPIVDVSRLFAEMVQHGLRTIAFCKSRKLCELVLSYTREILLETSPHLVHSICAYRGGYIAEERRKIETAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAVYVAFGGPLDQYFMKHPKKLFERPIECCHIDSQNKQVLEQHLACAAHEHPLVVQYDEKYFGSCLENVLNSLNARGYLSPNQSFDSSSRIWNYIGPEKYPSHAVNIRAIETVRYSVIDQRKNEVLEEIEESRAFFQVYEGAVYMCQGKTYLVEKLDLSSKTAFCKVADLKYYTKTRDYTDIHVTGGNIAYPTAVLNMFPKTNARAHICKVTTTWFGFYRIWRGSNQIFDAVDLALPQYSYESQAVWIPVPQSIKEVVLKKNYDFRGGLHAASHAVLNVVPLHITCNLSDLAAECPNPHDSRYYPDRILIYDQHPGGCGISVQVQPRFTKFLEAALDLLTCCRCSAEVGCPNCVQSFACNEYNEVLHKDAAIMIIKGVLEAENVINAEESPFL* 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2401 1258 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 747 905 IPR001650 -
Ahy20g2401 1258 MobiDBLite consensus disorder prediction 1 20 - -
Ahy20g2401 1258 Pfam Ubiquitin family 25 94 IPR000626 GO:0005515
Ahy20g2401 1258 Pfam Helicase conserved C-terminal domain 754 860 IPR001650 -
Ahy20g2401 1258 PANTHER ATP-DEPENDENT HELICASE HRQ1 36 1254 - -
Ahy20g2401 1258 SMART helicmild6 781 862 IPR001650 -
Ahy20g2401 1258 CDD Ubl_ubiquitin_like 25 94 - -
Ahy20g2401 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 869 IPR027417 -
Ahy20g2401 1258 Gene3D - 23 113 - -
Ahy20g2401 1258 ProSiteProfiles Ubiquitin domain profile. 23 94 IPR000626 GO:0005515
Ahy20g2401 1258 Pfam MrfA Zn-binding domain 1137 1219 IPR018973 -
Ahy20g2401 1258 MobiDBLite consensus disorder prediction 107 121 - -
Ahy20g2401 1258 Gene3D - 738 930 IPR027417 -
Ahy20g2401 1258 SUPERFAMILY Ubiquitin-like 20 95 IPR029071 -
Ahy20g2401 1258 MobiDBLite consensus disorder prediction 103 125 - -
Ahy20g2401 1258 SMART ultradead3 501 707 IPR014001 -
Ahy20g2401 1258 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 513 694 IPR014001 -
Ahy20g2401 1258 CDD SF2_C_Hrq 707 871 - -
Ahy20g2401 1258 CDD DEXHc_Hrq1-like 505 686 - -
Ahy20g2401 1258 Pfam DEAD/DEAH box helicase 507 676 IPR011545 GO:0003676|GO:0005524
Ahy20g2401 1258 Gene3D - 474 693 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2401 Ahy-Chr20 128798387 128807213 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2401 - - adu:107470956 2443.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2401 20 128798387 128807213 Ahy20g2401 20 128798387 128807213 ECH
Ahy20g2401 20 128798387 128807213 Ahy10g1913 10 104472587 104481392 hybridization