Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2390 ATGAAGATCCGGTCGGTGAAGCTAAGGGAGGCTCACGCCAACAAGGGCGGCCGCCCTTCCTTCTGCTCCGTACTGTGGGACCAGCAGGCTCGCCACCTTGTCACCGCTGCCTCCTCCGACATCTGCGTCGCCCTCCACGACCCCCTCCTTCCCTCCTCCACTCCCCTCAGGACCCTCCGCCACCACCGTGACGGTGTCACCGCCCTCGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCATCGATCATTCCGTCAAGCTCTACAAATTTCCCGCTGGAGAGTTCGAGACTAATATCACCAGGTTTACTCTTCCAATTCGTTCCTTAGCATTCAACAAATCTGGGAGCATGTTGGCAGCTGCTGGTGACGACGAAGGAATCAAGCTCATAAACACAATTGATGGAACCATAGCTAGAGTCCTCAAAGGCCACAAAGGTTCTGTTACTGGCTTAGCTTTTGACCCCAATGGCGAGTACTTAGCATCCTTGGACTCGTCTGGAACCGTTATTTTCTGGGAGCTTCACTCTGGGAGAATCCTTCATAACCTCAAAAACATTGCTCCTGATAACGGTTTAGATGTTTCGACTATGAATGTTCTCAGCTGGAGCCCTGATGGTGAGATGTTGGCTGTTCCAGGGTTGCGAAATGATGTGGTGATATATGATAGGGACACTGCTGAAAAGTTGTTTTCTTTGAGAGGGGATCACGCACAACCTATTTGTTACTTGGGTTGGTCGCCCAATGGAAAATACATGGCTACATCTAGTTTAGACAAGCAGGTTCTTATATGGGATGTTGATAGGAAGCAAGATATTGATAGACAAAAATTTGATGAGAGGATATGTTGCATGGCTTGGAAGCCAATTGGGAATGCCTTGGCTGTTATTGATGTTATGGGGAAGTATGGTATCTGGGAATCTGTTATCCCTTCATCTATGAAGTCTCCAACTGAAGATATACCTGAGAGCAAGAAAAGTAACGGGCTTCTTTTCTTTGAAGAGGATGATGAAGAAGTAAATAGTGCAGGTGGAAGCTTGAGTGATCTTGGTGAAAATAGTAATGGTGAGTCTGAGCCACCTAGCAGGAAAAGATTGCGAAAACAGACATTGAGTGAGGAGAATTTGGATATTGATGATATTGGTGGTGATGAGATTGATTTGTTTCCCAAGGTTGAATCTCATAAGAAACGAAACCGCTCTCAAAAGGAAAAATTGGATGATGTGAGTGTGGGTTATAGAAGCACAGTTGCTACATCTAAATCAAAGATGCAGGAGGCATTTCAACCGGGATCCACTCCTGTGCAGCCGGGAAAGAGGCGCTTCTTGTGCTACAACATGCTTGGAAGCGTAACCACTGTTGAACATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGTGCTCCACGAATTCCATCAATGACTGATCATTTTGGATTTACCATGGCTGCTTTGAATGAGAGTGGAAGCGTCTTTGCAAATCCTTGCAAGGGGGAGAACAACATGAGTACTCTCATGTATCGCCCATTTAGTAGCTGGGCAAATAATAGTGAGTGGTCCATGCGCTTTGAAGGGGAAGAAGTGAAGGTGGTTGCACTTGGTGATGCTTGGGTGGCTGCAGTAACTAGTTTTAACTATCTTCGCATCTTTACTGAGGGTGGTTTGCAGAGGCATATTATTTCAATAGATGGGCCAGTGGTTACTGCATCAGGTTTCAGGGATAAGCTTGCAGTTGTTACCCATGCCTCTGCTTGCCTTCCCTCCAATGATCAGGTGCTAGAATTGAGAGTATTTAATCTACTTCAGGGGACTCAGCTTCTTCGGGGTCGATTGCCAATAACTCCTGGTTCTTCTCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGAGTTCCTATGATTCCAAGGGTGTGCTAAGATTATACACAAGCCAATTTGGTGGTAGCTGGCTCCCGCTCTTCAGTGCTGCTAAGGAGAAGATTGATGAAAACTATTGGGTTGTGGGGTTGAATACAAGCAAGTTATATTGTGTAACGTGCAAAAAGCCTGAAACCTTCCCACAGGTGTTGCCAAAGCCAATCTTCAATGTACTAAATCTTTCATTTCCTCTTGCTTCCTCTGATTTGGGATCTGAAGCCCTTGAAAATGAGTTCATATTGAACAACATGCATCTGTTTGAGATTCAGAAAAGAATAGAAGACATGGCTAGTGCTGGCTTGGATACTAGTTCACTTGATGATGAAGCCTTCAATTATGAAGCAGCACAAGATAGATGTATCCTTAGGCTTATAGCATCCTGCTGTTATGGTGATAAACTTGTGCGTGCGACTGAACTTGTAAAGCTTTTGACACTAGAAAAATCAATGAATGGCGCAATAAAACTTGTCACTGCTCTGAAGCTTCCAAACTTGGCTGAGAGGTTCAGCAGCATATTGGAGGAAAGGCTACTCAATGAGATGAAGAACACTACAGAAACAAAACCCTTTGAAAACCATGTTGCACCCGTCACAGCTGATGCTTCCTTTAGCAGAAGCAAGATGCCAATTCAAACTGAAGCTTCCAAAACAGTAACTATGTCATTATCACCACCAGGATTATCTGCTCCATCATTCACCAAGACAGACAAAACACAAGTAGCAAATACACGTGAAAAAACAATGTTAAAGGAAACTGTGAAGGCAAAGCATGTAGAAGATGAAACAAGTAACAAAGCAGTGAAAGTGGATGCTCCTTCTCGTTCTCATTCACATGACCAATCTATAAAGCAGTCAAATAACAAGTCAGAGGCCAGTTTGGTGAAACCAACTCGGCCTTCTAATCCATTTTTGAAGTCTTCTGTTAAGTAG 2862 0.4441 MKIRSVKLREAHANKGGRPSFCSVLWDQQARHLVTAASSDICVALHDPLLPSSTPLRTLRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPAGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTIDGTIARVLKGHKGSVTGLAFDPNGEYLASLDSSGTVIFWELHSGRILHNLKNIAPDNGLDVSTMNVLSWSPDGEMLAVPGLRNDVVIYDRDTAEKLFSLRGDHAQPICYLGWSPNGKYMATSSLDKQVLIWDVDRKQDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGIWESVIPSSMKSPTEDIPESKKSNGLLFFEEDDEEVNSAGGSLSDLGENSNGESEPPSRKRLRKQTLSEENLDIDDIGGDEIDLFPKVESHKKRNRSQKEKLDDVSVGYRSTVATSKSKMQEAFQPGSTPVQPGKRRFLCYNMLGSVTTVEHDGYSHIEIDFHDTGSAPRIPSMTDHFGFTMAALNESGSVFANPCKGENNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGDAWVAAVTSFNYLRIFTEGGLQRHIISIDGPVVTASGFRDKLAVVTHASACLPSNDQVLELRVFNLLQGTQLLRGRLPITPGSSLSWFGFSEEGQLSSYDSKGVLRLYTSQFGGSWLPLFSAAKEKIDENYWVVGLNTSKLYCVTCKKPETFPQVLPKPIFNVLNLSFPLASSDLGSEALENEFILNNMHLFEIQKRIEDMASAGLDTSSLDDEAFNYEAAQDRCILRLIASCCYGDKLVRATELVKLLTLEKSMNGAIKLVTALKLPNLAERFSSILEERLLNEMKNTTETKPFENHVAPVTADASFSRSKMPIQTEASKTVTMSLSPPGLSAPSFTKTDKTQVANTREKTMLKETVKAKHVEDETSNKAVKVDAPSRSHSHDQSIKQSNNKSEASLVKPTRPSNPFLKSSVK* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2390 953 MobiDBLite consensus disorder prediction 342 378 - -
Ahy20g2390 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Ahy20g2390 953 MobiDBLite consensus disorder prediction 359 376 - -
Ahy20g2390 953 CDD WD40 22 297 - -
Ahy20g2390 953 Pfam Minichromosome loss protein, Mcl1, middle region 428 709 IPR022100 -
Ahy20g2390 953 Gene3D - 105 338 IPR015943 GO:0005515
Ahy20g2390 953 MobiDBLite consensus disorder prediction 928 953 - -
Ahy20g2390 953 Gene3D - 2 97 IPR015943 GO:0005515
Ahy20g2390 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Ahy20g2390 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Ahy20g2390 953 Pfam Eukaryotic translation initiation factor eIF2A 193 259 IPR013979 -
Ahy20g2390 953 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 932 - -
Ahy20g2390 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Ahy20g2390 953 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Ahy20g2390 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Ahy20g2390 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Ahy20g2390 953 MobiDBLite consensus disorder prediction 883 927 - -
Ahy20g2390 953 MobiDBLite consensus disorder prediction 864 953 - -
Ahy20g2390 953 MobiDBLite consensus disorder prediction 864 882 - -
Ahy20g2390 953 Pfam WD domain, G-beta repeat 54 90 IPR001680 GO:0005515
Ahy20g2390 953 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Ahy20g2390 953 SMART WD40_4 227 267 IPR001680 GO:0005515
Ahy20g2390 953 SMART WD40_4 178 224 IPR001680 GO:0005515
Ahy20g2390 953 SMART WD40_4 52 91 IPR001680 GO:0005515
Ahy20g2390 953 SMART WD40_4 136 175 IPR001680 GO:0005515
Ahy20g2390 953 SMART WD40_4 94 133 IPR001680 GO:0005515
Ahy20g2390 953 SUPERFAMILY WD40 repeat-like 22 308 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2390 Ahy-Chr20 128297138 128302951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2390 58 273 Miscellaneous Gene Families AT5G08390 21.659 8.56e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2390 K11274 - gmx:100818807 1442.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2390 20 128297138 128302951 Ahy20g2390 20 128297138 128302951 ECH