Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2312 ATGGGCATAACAGAAGCATGTTCAAGGTTCATTGTTGACTTCTTGCAAGCATTCAAACACTCATCACCACCAAGCTCAATTCATGATGAGCTTGATCACAATCACCATAGCCCTGATTGCAAGCCCCAGAATTCGCTAAAGCTCGATGACAACACGGTTCGCGCCCTCATGACTGTGTTTGGCATGCAAAACAATGGAAGAATCAAGAAAGAAAATGCTAGAAGAGTTGTGGAGAAGCTTGGTTTGGTGCATGACAAAGATAATAACAACAAGGCCTCATCATCACCATCAAGATTTGAGCTTCATGGTGATGGTGGATTGTTGGAGGGCGATGAAGTGCCGGTAGAAGAGGTTCTTGGTGATTTGGAGGACATGTCAAAGCGCAATGAGCTCTTGCATGAAGCATTCAAGATCTTTGATGAGGATGGAGATGGTTACATTGATGCAATGGAGTTGAAGAGGGTGCTAGATTGTCTTGGTTTGGATAAAGGTTGGGACATGAACACAATTGAGAAGATGGTTAAGGTTGTTGATTTGAATCTTGATGGCAAGGTTGACTTTGGTGAGTTTGAGTTGATGATGGGATAG 588 0.432 MGITEACSRFIVDFLQAFKHSSPPSSIHDELDHNHHSPDCKPQNSLKLDDNTVRALMTVFGMQNNGRIKKENARRVVEKLGLVHDKDNNNKASSSPSRFELHGDGGLLEGDEVPVEEVLGDLEDMSKRNELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNTIEKMVKVVDLNLDGKVDFGEFELMMG* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2312 195 Pfam EF-hand domain pair 131 194 IPR002048 GO:0005509
Ahy20g2312 195 Gene3D - 30 195 - -
Ahy20g2312 195 ProSitePatterns EF-hand calcium-binding domain. 140 152 IPR018247 -
Ahy20g2312 195 SMART efh_1 169 195 IPR002048 GO:0005509
Ahy20g2312 195 SMART efh_1 131 159 IPR002048 GO:0005509
Ahy20g2312 195 ProSiteProfiles EF-hand calcium-binding domain profile. 165 195 IPR002048 GO:0005509
Ahy20g2312 195 PANTHER CALCIUM BINDING 118 194 - -
Ahy20g2312 195 MobiDBLite consensus disorder prediction 86 106 - -
Ahy20g2312 195 CDD EFh 132 190 IPR002048 GO:0005509
Ahy20g2312 195 MobiDBLite consensus disorder prediction 25 43 - -
Ahy20g2312 195 MobiDBLite consensus disorder prediction 22 43 - -
Ahy20g2312 195 PANTHER CALCIUM BINDING PROTEIN 118 194 - -
Ahy20g2312 195 SUPERFAMILY EF-hand 47 194 IPR011992 -
Ahy20g2312 195 ProSiteProfiles EF-hand calcium-binding domain profile. 127 162 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2312 Ahy-Chr20 126453888 126455234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2312 132 194 EF-hand Containing Proteins AT4G20780 58.730 1.21e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2312 - - adu:107470962 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2312 20 126453888 126455234 Ahy10g1842 10 102712003 102713250 hybridization