Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2307 ATGGGAACGAGAACCGCGCAATTTCTCGTGCGAGAGCTCGAGAACCGCTTCGTCCCCGCGGTGAAAAACTGCGCGAGAATATCGGAATTGAAGAAGATTCACGCACACGTCGTGAAGCTTTCGCTATCACAGAGCAACTTTGTGATTACAAAAATGTTGGATTGTTGCGACAAATTCAGTAATGTAAATTATGCCACCTTGCTATTCGAGCAACTCGTGGAGCCAAACGTGTTCTCTTACAACGCAATCATCAGAGCCTTAACGCACAATCAAGAACACTACCTAGCAATCACAGTGTTCAAGAGAATTCTGATGAGGGAAGAAAGGATTTCAGATAAAGTTCCGATTTTGCCCAATGAATTCACGTTCCCGTTTGTGATAAAGTCGTGTTCGGTGCTCTCATTGCGGTGTCTTGGTGAAGAGATTCATGGGCAGGTTTGGAAATTTGGGCTGAAGTCAAATTCTGTGACCGAGAATGCACTGATTGATATGTATACGAAATTCGGTGATCTGAGGAATGCACATAAGGTGTTTGAGGAAATGACTGAGCCAGATGCTGTTTCCTGGAATGGCTTGATCTTTGGGTATGCTAGGTTGGGGCAGATGGAGAGTGCAAGGGTGCTGTTTGATGAAATGCCTTGTAGAACAATTGTTTCTTGGACTGCAATGATATCCGGGTACTGCGGAATAGGGTGTTATGGTGATGCATTGGACATCTTCAGGAGGATGCAAATGGTGGGCATTGAGGCTGATGAGATTAGTGTTATAACTGTTTTGCCTGCTTGTGCACACCTTGGAGCTCTTGAGGTTGGGAAATGGATTCATATGTACTCAGGTAAAAACGGGTTTCTTCAGAAAACCGGCATCTGCAATGCACTGGTTGAAATGTATGCTAAGTGCGGTTGCATTGATGAAGCAATGAGCTTGTTTGATCAAATGGTTGAGAAGGATGTGATTTCTTGGAGTACCATGATTGGAGGGCTAGCTAATCATGGGAAAGCTCATGCATCAATTGAGCTGTTTCGGAAAATGCAGAAGGCGCAAGTTACACCAAATGGGATAACTTTTCTTGGTGTTTTGTCAGCTTGCACTCATGCAGGGTTTTGGAATGAGGGGTTGAAATATTTTGATGTCATGAGGTTGGAGTATCATATAGCCCCTGAAATTGAGCACTATGGTTGCTTGGTTGATCTTCTAGGACGTTCTGGGCAGCTCGAGCAGGCCCTTGACGCAATATCTAAGATGCTAATGAAGCCAGATTCAAGGATATGGAACTCCTTGTTAAGCTCTTGCAGGATTCATCGCAATCTTGGGATTGCTGTGGTTGCAATGGAACAGCTTTTGGAGCTTGAGCCAGAGGAATCCGGAAACTATGTTTTGCTTGCTAACATATATGCAGAACTTGGCAAGTGGGAAGGTGTATCAAATGTTAGGAAACTCATTAGAAGCAAGGGGATAAAGAAAACGCCAGGGTGTAGCATGATTGAGGTTGACAATGTGGTTCAAGAGTTTGTATCAGGTGACGATTCAAAACCCTTCTCACAAGATGTGTTTTCGATCCTAGAAGTCCTGGTTTTACACCAAACTAGAACTAATGATTTGATGGAGGATGTCACAGAAGATGCAAGTCAACTCTGGTGA 1641 0.4394 MGTRTAQFLVRELENRFVPAVKNCARISELKKIHAHVVKLSLSQSNFVITKMLDCCDKFSNVNYATLLFEQLVEPNVFSYNAIIRALTHNQEHYLAITVFKRILMREERISDKVPILPNEFTFPFVIKSCSVLSLRCLGEEIHGQVWKFGLKSNSVTENALIDMYTKFGDLRNAHKVFEEMTEPDAVSWNGLIFGYARLGQMESARVLFDEMPCRTIVSWTAMISGYCGIGCYGDALDIFRRMQMVGIEADEISVITVLPACAHLGALEVGKWIHMYSGKNGFLQKTGICNALVEMYAKCGCIDEAMSLFDQMVEKDVISWSTMIGGLANHGKAHASIELFRKMQKAQVTPNGITFLGVLSACTHAGFWNEGLKYFDVMRLEYHIAPEIEHYGCLVDLLGRSGQLEQALDAISKMLMKPDSRIWNSLLSSCRIHRNLGIAVVAMEQLLELEPEESGNYVLLANIYAELGKWEGVSNVRKLIRSKGIKKTPGCSMIEVDNVVQEFVSGDDSKPFSQDVFSILEVLVLHQTRTNDLMEDVTEDASQLW* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2307 546 Gene3D Tetratricopeptide repeat domain 3 136 IPR011990 GO:0005515
Ahy20g2307 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Ahy20g2307 546 Pfam Pentatricopeptide repeat domain 73 130 IPR002885 -
Ahy20g2307 546 Gene3D Tetratricopeptide repeat domain 145 276 IPR011990 GO:0005515
Ahy20g2307 546 Pfam PPR repeat 159 183 IPR002885 -
Ahy20g2307 546 Pfam PPR repeat 391 417 IPR002885 -
Ahy20g2307 546 Pfam PPR repeat 187 214 IPR002885 -
Ahy20g2307 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
Ahy20g2307 546 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 10 539 - -
Ahy20g2307 546 PANTHER OS05G0439300 PROTEIN 10 539 - -
Ahy20g2307 546 Pfam E motif 434 496 IPR046848 -
Ahy20g2307 546 Pfam PPR repeat family 216 263 IPR002885 -
Ahy20g2307 546 Pfam PPR repeat family 316 363 IPR002885 -
Ahy20g2307 546 Gene3D Tetratricopeptide repeat domain 291 514 IPR011990 GO:0005515
Ahy20g2307 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 184 IPR002885 -
Ahy20g2307 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Ahy20g2307 546 SUPERFAMILY TPR-like 164 473 IPR011990 GO:0005515
Ahy20g2307 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 316 IPR002885 -
Ahy20g2307 546 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Ahy20g2307 546 TIGRFAM PPR: pentatricopeptide repeat domain 289 318 IPR002885 -
Ahy20g2307 546 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Ahy20g2307 546 TIGRFAM PPR: pentatricopeptide repeat domain 187 213 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2307 Ahy-Chr20 126358895 126360817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2307 24 530 Glycoside Hydrolase AT3G49170 31.250 3.00e-84 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2307 - - cam:101511241 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2307 20 126358895 126360817 Ahy20g2307 20 126358895 126360817 ECH