Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2306 ATGTGTTACCGATTCACTGAGGTATTGAAGAAGTGTTCAAGGTACCGTTTGATTGATCAGGGGAAGCAGCTACATGGGGTTATGGAGAAGCTAGGGTTAGGGTTTGATTTGGTTCCGAACAATAATCTCATTGATATGTACGCAAAATGTGGCACTATGAAATTGGCATGTTTGGTGTTTGATAAAATGCCACAAAGAAATGTGGTGTCTTGGACGGCTCTGATGTGTGGTTATTTGCAAAATGGTGATCCCAATGCCTCTTTAGTGTTATTCTCTAAAATGGGGCTATCTAGTATTAAGCCTAATGAGTTCACACTTTCTACTGCTCTAAAAGCTTCAACGGTTTTGGGTGTACCTCAGAATGGAATGCAGATTCATGGGGTTTGTGCAAAATCCAATCTTGATTTTGCGCCTGTCGTGGGAAATTCGATTATTGACATGTATTCCAAGTGGGGACGGGTTGGCGAGGCAGCTAAGATGTTCGATGCTATGCCAGTGAGGAACCTTGTGAGTTGGAATGCAATGATTGCCGGATACACCCATGAGAGAAATGGTGAAGGGGCTTTGAATCTGTTTAGGGAGATGCAAGAAAAGGGAGAAGTTCCTGATGAATATACATATTCAAGTACTTTAAAGGCATGTAGTTGTGTTGGCATGGTCGCTGAAGGATCGCAAATACATGCTGCCTTAATCAGACAAGGATCTTCATACTTGGCTCAATCAACTGTCGCAGGTGCTCTGGTTGATTTTTATGTCAAATGCAGACACACAGCCAAAGCTAGGAAGGTGTTCGATCAAATTGAACATAAGAATGTGGTACCTTGGAGCACACTTATTCTTGGCTATGCTCAAGAAGACAATTTGCAAGAGTCCATAAACTTGTTTCATCAGTTGAGAGAGAGCAGACATAAGGTGGATGGGTTTGTGCTCTCAAGTCTCATAGGTGTGTTTGCTGATTTCGCCCTTGTGTTGCAGGGGAAGCAAATGCACGCTTACGCCATCAAAGTACCATTCGGATTAGAAGCATCAGTGGCAAATTCAGTTTTAGATATGTACATGAAATGCGGATTAACAGACGAGGCAGATGCACTTTTCAGAGAGATGCCAACAAGGAATGTTGTTTCGTGGACGGTTATGATTACTGGTTACGGTAAACATGGTATAGGTTACAAGGCAGTTAAACTTTTCGCCGAAATGCAAGTTCATGGAATCGAACCTGACAGTGTGACATACTTAGCTGTGCTCTCAGCTTGCAGCCATACAGGACTCATCAAAGAAGGACAACAATACTTCTCCAGTTTCCTTAGCAATCCCCATTTCAAACCACAAGTAGAGCATTATGCTTGCATGGTTGATCTCCTTGGACGTGCCGGGCGCTTAAACGACGCGAAGGAGCTCATTGAGACGATGCCCTTGAAGCCAAATACCGGTATATGGCAGACACTACTTAGTGCTTGTAGAATGCATGGGGAGATGGAGATGGGTGAAAAAGTGGGAGAGATATTATTGAGAATGGATGGTAATAATCCAGTGAACTATGTCATGTTGTCAAACATGTATGCTGATGCAGGATATTGGAATGAAAGCGAGAAGATAAGAGAGAAAGTGAAGAGGAAGGGATTGAAGAAAGAGGCGGGGCGAAGTTGGGTAGAAATAAATAAGGAAATCCACATTTTCTTCAATGGAGATAGCACACATACACTCATAGAGAAGATTCATCAAGTGTTGAGAGAAATGGAGAAGAGGATGAAGGAGGAAATAGGGTATGTTCATAATATGAATTTTGCATTGCATGATGTTGAAGAGGAATCAAAGGTGGAGAGTTTGAGGTACCATAGTGAGAAATTGGCTATTGGATTGGTTTTGGTCAGTGGTGGGGTAAAAGGAGAGAGGATGGTTAGGATTTTCAAGAATTTGAGGGTTTGTGGTGACTGCCATACCTTCATCAAGGGTCTCTCTAAGGTTTTGAAGATTGTATTTGTGGTGAGAGATGCAAATAGGTTCCACAGATTTGAGAACGGTCTATGTTCTTGTGGAGATTATTGGTAA 2049 0.4226 MCYRFTEVLKKCSRYRLIDQGKQLHGVMEKLGLGFDLVPNNNLIDMYAKCGTMKLACLVFDKMPQRNVVSWTALMCGYLQNGDPNASLVLFSKMGLSSIKPNEFTLSTALKASTVLGVPQNGMQIHGVCAKSNLDFAPVVGNSIIDMYSKWGRVGEAAKMFDAMPVRNLVSWNAMIAGYTHERNGEGALNLFREMQEKGEVPDEYTYSSTLKACSCVGMVAEGSQIHAALIRQGSSYLAQSTVAGALVDFYVKCRHTAKARKVFDQIEHKNVVPWSTLILGYAQEDNLQESINLFHQLRESRHKVDGFVLSSLIGVFADFALVLQGKQMHAYAIKVPFGLEASVANSVLDMYMKCGLTDEADALFREMPTRNVVSWTVMITGYGKHGIGYKAVKLFAEMQVHGIEPDSVTYLAVLSACSHTGLIKEGQQYFSSFLSNPHFKPQVEHYACMVDLLGRAGRLNDAKELIETMPLKPNTGIWQTLLSACRMHGEMEMGEKVGEILLRMDGNNPVNYVMLSNMYADAGYWNESEKIREKVKRKGLKKEAGRSWVEINKEIHIFFNGDSTHTLIEKIHQVLREMEKRMKEEIGYVHNMNFALHDVEEESKVESLRYHSEKLAIGLVLVSGGVKGERMVRIFKNLRVCGDCHTFIKGLSKVLKIVFVVRDANRFHRFENGLCSCGDYW* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2306 682 Pfam PPR repeat 447 470 IPR002885 -
Ahy20g2306 682 Pfam PPR repeat 274 301 IPR002885 -
Ahy20g2306 682 Pfam DYW family of nucleic acid deaminases 588 682 IPR032867 GO:0008270
Ahy20g2306 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Ahy20g2306 682 Pfam PPR repeat family 371 419 IPR002885 -
Ahy20g2306 682 Pfam PPR repeat family 168 214 IPR002885 -
Ahy20g2306 682 Pfam PPR repeat family 66 112 IPR002885 -
Ahy20g2306 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Ahy20g2306 682 TIGRFAM PPR: pentatricopeptide repeat domain 69 103 IPR002885 -
Ahy20g2306 682 TIGRFAM PPR: pentatricopeptide repeat domain 374 408 IPR002885 -
Ahy20g2306 682 TIGRFAM PPR: pentatricopeptide repeat domain 142 168 IPR002885 -
Ahy20g2306 682 TIGRFAM PPR: pentatricopeptide repeat domain 346 374 IPR002885 -
Ahy20g2306 682 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Ahy20g2306 682 Pfam E motif 489 551 IPR046848 -
Ahy20g2306 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Ahy20g2306 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Ahy20g2306 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Ahy20g2306 682 Gene3D Tetratricopeptide repeat domain 435 615 IPR011990 GO:0005515
Ahy20g2306 682 Gene3D Tetratricopeptide repeat domain 123 229 IPR011990 GO:0005515
Ahy20g2306 682 Gene3D Tetratricopeptide repeat domain 230 331 IPR011990 GO:0005515
Ahy20g2306 682 Gene3D Tetratricopeptide repeat domain 333 430 IPR011990 GO:0005515
Ahy20g2306 682 Gene3D Tetratricopeptide repeat domain 3 117 IPR011990 GO:0005515
Ahy20g2306 682 PANTHER - 4 640 - -
Ahy20g2306 682 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 4 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2306 Ahy-Chr20 126356486 126358934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2306 3 682 Glycoside Hydrolase AT3G49170 38.095 6.13e-161 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2306 - - gmx:100806657 1086.25