Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2272 ATGCGCCCACCGGTTATTTTCCAAACTACCCCTTTTTTTTCTTCTTCTGGTGATCGCAGGCTTAACACACTCGCAAAGCACTTTCTACAAACCGAATCTGAGAACAATCGAAACATGTCAACTTCTCCAACTTCTTCTCATGGTGATTCCGTCTTTGCTCATCTCGTTCTCGCTCCTGAAGATCCTATTCTCGGTGTGACTCTCGCTTACAATAAGGATCCAAGCCCTGTTAAGCTCAACTTAGGTGTTGGTGCTTACAGAACTGAGGAAGGGAAACCTCTTGTGTTGAATGTGGTGAGGCGTGTGGAACAGGAACTCGTCAGTAACCCGGCACGCAACAAGGAGTATCTTCCTATTACTGGAGTAGCTGATTTTAATAAACTCAGTGCTCAGCTCATTTTTGGTGCTGACAGCCCTGCAATTCAAGAGAGCAGAGTTACCACCGTTCAATGCTTGTCTGGTACTGGTTCATTGAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGAAATATATATTTGCCTAAACCAACATGGGGAAACCACCCAAAGGTTTTTACCCTGGCAGGGCTAACTGTCCAAACGTATCGCTACTATGCTCCAGCAACTCGTGGGCTTGATTTCCAAGGACTAATGGAAGATCTTGGTGCTGCCCCATCTGGATCAGTTATTCTGCTACATGCATGTGCACATAATCCTACTGGTGTTGATCCAACCGCTGAACAATGGGAAGAGATTAGGAAGCTGATCAGATCAAAGGCCTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTGGATAAAGATGCACAGCCTGTTCGTTCTTTTGTTGCTGATGGGGGTGAATTGTTGGTAGCCCAGAGTTATGCAAAGAACATGGGTCTTTACGGTGAACGTGTTGGCGCCTTAAGCATTGTGTGCAAGTCAGCTGATGTTGCAAGCAAGGTTGAGAGCCAACTGAAACTTGTGATTAGGCCCATGTACTCAAATCCTCCCATTCATGGTGCAACCATTGTGGCTGCAGTTCTCAAGGACAGTGATTTGTTCAATGAGTGGACTATTGAGTTGAAGGAAATGGCAGACCGAATAATCAGTATGCGCCAACAACTTTTTGATGCTTTACACGCCAGAGGTACCCCTGGTGATTGGAGTCACATTATCAAGCAGATTGGAATGTTCACCTTCACAGGATTGAATTCTGAACAAGTTTCCTTCATGACTAGAGAGTACCACATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTTAGTTCCAAAACAGTCCCTCATCTGGCGGATGCAATTCATGCAGCTGTCACCAAAGCTGTGTAG 1359 0.4533 MRPPVIFQTTPFFSSSGDRRLNTLAKHFLQTESENNRNMSTSPTSSHGDSVFAHLVLAPEDPILGVTLAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQELVSNPARNKEYLPITGVADFNKLSAQLIFGADSPAIQESRVTTVQCLSGTGSLRVGGEFLAKHYHQRNIYLPKPTWGNHPKVFTLAGLTVQTYRYYAPATRGLDFQGLMEDLGAAPSGSVILLHACAHNPTGVDPTAEQWEEIRKLIRSKALLPFFDSAYQGFASGSLDKDAQPVRSFVADGGELLVAQSYAKNMGLYGERVGALSIVCKSADVASKVESQLKLVIRPMYSNPPIHGATIVAAVLKDSDLFNEWTIELKEMADRIISMRQQLFDALHARGTPGDWSHIIKQIGMFTFTGLNSEQVSFMTREYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTKAV* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2272 452 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 295 308 IPR004838 GO:0003824|GO:0009058|GO:0030170
Ahy20g2272 452 CDD AAT_like 79 432 - -
Ahy20g2272 452 Gene3D Aspartate Aminotransferase, domain 1 57 444 IPR015422 GO:0003824
Ahy20g2272 452 PRINTS Aspartate aminotransferase signature 226 245 IPR000796 GO:0006520|GO:0008483
Ahy20g2272 452 PRINTS Aspartate aminotransferase signature 257 269 IPR000796 GO:0006520|GO:0008483
Ahy20g2272 452 PRINTS Aspartate aminotransferase signature 325 350 IPR000796 GO:0006520|GO:0008483
Ahy20g2272 452 PRINTS Aspartate aminotransferase signature 393 411 IPR000796 GO:0006520|GO:0008483
Ahy20g2272 452 PANTHER ASPARTATE AMINOTRANSFERASE 49 450 IPR000796 GO:0006520|GO:0008483
Ahy20g2272 452 Pfam Aminotransferase class I and II 78 444 IPR004839 GO:0009058|GO:0030170
Ahy20g2272 452 SUPERFAMILY PLP-dependent transferases 50 448 IPR015424 -
Ahy20g2272 452 Gene3D - 111 352 IPR015421 GO:0003824
Ahy20g2272 452 PANTHER ASPARTATE AMINOTRANSFERASE 49 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2272 Ahy-Chr20 124863032 124867270 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2272 K14454 - gmx:547509 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2272 20 124863032 124867270 Ahy20g2272 20 124863032 124867270 ECH
Ahy20g2272 20 124863032 124867270 Ahy10g1809 10 101295319 101299582 hybridization