Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2200 ATGGACGACGCCGGAAACATTCCAAACTCCGGCAACCCATCGCACAAGGTCATCGCCGTCACTGCCGGGGAAGCGCACACTCTCCTTCTTACCGGGGATGGGAGTGTGTACTCATGGGGAAGAGGAATGTTTGGGAGGCTTGGCCATGGTTCAGAAAAGGATGAGCTTTTACCAGTTCAGGTCAAGTTTCAGAACCCTAATGGAGGAGAAGCAGACACACCCAAAATTGTTGCTATTGCTTCTGGTGCTTATCATAATCTTGCTCTTGCAGATGACGGGTCCGTTTGGAGTTGGGGTTACAATATTTATGGTCAACTTGGCACTGACGGAGAGGACACACCTGATGAAAATTCTATTGGTGGAGTTTATAACCTAGCGCCCCACTTATTGAATAAGTTTCCCGAGTCGCACCCACTTGATTCTTCAACTGGTGTCTCTGAAGTACAAGGAAAAGGATCAATTAAGATACATGCTGTCAAAGCAGGAGGAATGATGTCTATGGCTATTGATAATCGTGGCACCCTCTGGATGTGGGGAAACTGCCCACAAGAAAGCAAAGGTGAATTCTCTCTTGTAAGTAGTTTCATTCCAATGCCAATACTGGCCTTTCATGGCCTTAATGTTGCCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCATTGGTTAGTGCCGGAGAATCAAACAATGGTGAAGATTTGGTCTGCTACTCTTGGGGTTTTAACAACCATGGCCAGTTAGGATTGGGGGATAGGGAGAACAGGGCACATCCAGAAGTTGTGAAAACATTTGATGAGGAGTCCCCTTGGACAATTTATGACATAGCATGTGGTGCTGCTCACACTGCCTTGCTCACTCGCAAAAAGAAATCTACCGAGTTGGAAAGCAAGTGCTGGACTTTTGGCCTTGGGGATAATGGCCAACTCGGGCATGGAACAACACAAAGCGCATTATTTCCTACACCTGTTCAAGACTTGCCGCAAGATATATCTCTTATTGGTATCGATTGCGGCTTGTTTCATACAAGTGTGGTTTCCTCATCAGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTGGTCGTGGTTCATCAGATTCTGGTGATGCCCTCTCACCCTTGCTTAAACCTTGTGCTCCATACCAACCTAAGTTTCCAGATCCGGTTCAAGTTGCATGTGGAGCTGCACATACTGTTATTGTTGCGCGGGATGGATATAAGGTGTGGTCTTGGGGTAGAGGGCGATGTGGAGTTCTTGGAACCGGTAACGAATTGGACTGTTATACCCCCACCAAGGTGCGGTGGCCTCCACCGACCGAAGATTCAGAGGAAGAGGAATCAAAGAGCTCCCTCGAGCAGGACAGAGAGAAAGAAAAGGAGGCCGAAGTAAAAACAGAAACAGATGAGAAATTATCCTCGGCACTGAATGAGCTGAAGCAGCTTCAATTGAAGCTATCCACAATGGAACAATATGCTAGCATACTTCATGGTTGTGTTTTCGGAAAACCTTTTGCTGAGCAAGATGTCCCTGCTTCATTGAAGGATTCAGGTTCATTCAACATTGCAAAAGAATGGGAGAACATGTTGGAGACTGCAGATCATAGGACGCTAATGAGGTTGGAAATGTTCTACCGGGACATGCTTGCTGGTGTGAAAGATAAACAAATGAAGAGAAGGATCAAGGAAATTGTAAAGGAGTGCCTCCAATCACCGGAGCCGAAAAATTAG 1743 0.4664 MDDAGNIPNSGNPSHKVIAVTAGEAHTLLLTGDGSVYSWGRGMFGRLGHGSEKDELLPVQVKFQNPNGGEADTPKIVAIASGAYHNLALADDGSVWSWGYNIYGQLGTDGEDTPDENSIGGVYNLAPHLLNKFPESHPLDSSTGVSEVQGKGSIKIHAVKAGGMMSMAIDNRGTLWMWGNCPQESKGEFSLVSSFIPMPILAFHGLNVAKVACGNEHVVALVSAGESNNGEDLVCYSWGFNNHGQLGLGDRENRAHPEVVKTFDEESPWTIYDIACGAAHTALLTRKKKSTELESKCWTFGLGDNGQLGHGTTQSALFPTPVQDLPQDISLIGIDCGLFHTSVVSSSGDVWSWGMEKGLGLCPDAGRGSSDSGDALSPLLKPCAPYQPKFPDPVQVACGAAHTVIVARDGYKVWSWGRGRCGVLGTGNELDCYTPTKVRWPPPTEDSEEEESKSSLEQDREKEKEAEVKTETDEKLSSALNELKQLQLKLSTMEQYASILHGCVFGKPFAEQDVPASLKDSGSFNIAKEWENMLETADHRTLMRLEMFYRDMLAGVKDKQMKRRIKEIVKECLQSPEPKN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2200 580 MobiDBLite consensus disorder prediction 442 475 - -
Ahy20g2200 580 Pfam Regulator of chromosome condensation (RCC1) repeat 236 284 IPR000408 -
Ahy20g2200 580 Pfam Regulator of chromosome condensation (RCC1) repeat 92 169 IPR000408 -
Ahy20g2200 580 Pfam Regulator of chromosome condensation (RCC1) repeat 297 343 IPR000408 -
Ahy20g2200 580 Pfam Regulator of chromosome condensation (RCC1) repeat 413 442 IPR000408 -
Ahy20g2200 580 Pfam Regulator of chromosome condensation (RCC1) repeat 33 89 IPR000408 -
Ahy20g2200 580 Gene3D - 4 230 IPR009091 -
Ahy20g2200 580 Gene3D - 231 478 IPR009091 -
Ahy20g2200 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 409 IPR000408 -
Ahy20g2200 580 MobiDBLite consensus disorder prediction 434 475 - -
Ahy20g2200 580 PRINTS Chromosome condensation regulator RCC1 signature 406 427 IPR000408 -
Ahy20g2200 580 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Ahy20g2200 580 PRINTS Chromosome condensation regulator RCC1 signature 95 111 IPR000408 -
Ahy20g2200 580 PRINTS Chromosome condensation regulator RCC1 signature 211 227 IPR000408 -
Ahy20g2200 580 PRINTS Chromosome condensation regulator RCC1 signature 337 355 IPR000408 -
Ahy20g2200 580 SUPERFAMILY RCC1/BLIP-II 15 356 IPR009091 -
Ahy20g2200 580 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 2 577 - -
Ahy20g2200 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 93 172 IPR000408 -
Ahy20g2200 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 173 224 IPR000408 -
Ahy20g2200 580 Coils Coil 469 496 - -
Ahy20g2200 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 347 IPR000408 -
Ahy20g2200 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 233 287 IPR000408 -
Ahy20g2200 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 92 IPR000408 -
Ahy20g2200 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 2 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2200 Ahy-Chr20 122367059 122370835 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2200 - - gmx:100815199 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2200 20 122367059 122370835 Ahy20g2200 20 122367059 122370835 ECH
Ahy20g2200 20 122367059 122370835 Ahy10g1760 10 99377660 99381474 hybridization