Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2024 ATGGAATCGGAGAAAACAAACTTTCAAAGCGTGACGATAGGATCATGTGCAAGACCCTCATGGTCCATCCTCTTTCTCCTCTTCACCCTCATCGCCATCTTCTCCATTCAGCTCTCCACCACCACTCCCTACCTCTTTCCTCCCAACTGGGCCCTCATTCGCCCGCAACGACCCGTCCCTTCCTCCTCCGCATCGGATCCGATCACATGCTCCGGTTTCTTCAGGGCGCTTCCAAAGAGGAAGCTCGTCATGTCCATCAAGGACTTCGGCGGCGTCGGCGACGGCAAAACATCCAATACCGAAGCCTTCAGGAGAGCCATTCGCTACATGCAGCGCTTTCAACACCGTGGTGGGTCCCAGCTTAATATCCCTAACGGAACTTGGCTCACCGCTCCCTTCAATCTCACCTCTGATTTCACCCTTTTCTTGAACCAAGGTGCTCTTCTTTTGGCCTCTCAGGACGTAAAAGAATGGCCTATAATTGAGCCGTTGCCATCTTATGGAAGAGGAAGAGAGAGGTTAGGAGGAAGACATATTAGCCTTATACATGCAAATGGACTCAAGAATGTTATCATCACAGGAGATAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCACACAAGAGGCCACCTCCTTGAACTAATTAACTCCGATAATGTTCTCATATCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACCATTCATCCTGTTTACTGCAGAAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACCGATGGCATAGACCCAGACTCAAGCACCAATGTATGCATAGAAGATAACTACATAGAAAGTGGAGATGATCTAGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACCATGGCGCATCCTAGCACAAATATCATAGTGAGGAGAGTCTCAGGCACAACCCCAACTTGTTCCGGAGTTGGAATAGGCAGTGAGATGTCCGGAGGAATTTCGAATATAACAATTGAGGGTCTACATGTGTGGGATTCTGCAGCTGGTGTTCGCATGAAATCCGATAAGGGTAGAGGTGGCTATATATCCAATGTTAGCATAAGCAACATAAAAATGGAAAGAGTGAAGATACCAATTAGGTTCAGTAGAGGTTCAAATGATCACCCTGATGATGGGTGGGATCCAAATGCTGTTCCAAGATTTAAGGACATCTCTATAAGCAACATTGTCAGTGTGAATTCGACCAAAGCACCGGTTTTAGAAGGTATAGAGGGGTCATCATTTGAAGGCTTATGCTTCAAGAATATCACACTGCATGGAATTGCCGCATCCATAAAATGGCATTGTGAATATATATCTGGTTTTGCCACCAAGGTGTTTCCTCTTCCATGCCCCGATTTAAAGAACACTAGCAGTGATTCATCATGGTGTTCACCTTCTTGA 1464 0.4597 MESEKTNFQSVTIGSCARPSWSILFLLFTLIAIFSIQLSTTTPYLFPPNWALIRPQRPVPSSSASDPITCSGFFRALPKRKLVMSIKDFGGVGDGKTSNTEAFRRAIRYMQRFQHRGGSQLNIPNGTWLTAPFNLTSDFTLFLNQGALLLASQDVKEWPIIEPLPSYGRGRERLGGRHISLIHANGLKNVIITGDNGTVDGQGKMWWELWWNRTLEHTRGHLLELINSDNVLISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMAHPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNITIEGLHVWDSAAGVRMKSDKGRGGYISNVSISNIKMERVKIPIRFSRGSNDHPDDGWDPNAVPRFKDISISNIVSVNSTKAPVLEGIEGSSFEGLCFKNITLHGIAASIKWHCEYISGFATKVFPLPCPDLKNTSSDSSWCSPS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2024 487 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Ahy20g2024 487 SMART pbh1 312 334 IPR006626 -
Ahy20g2024 487 SMART pbh1 278 310 IPR006626 -
Ahy20g2024 487 SMART pbh1 228 250 IPR006626 -
Ahy20g2024 487 SMART pbh1 251 277 IPR006626 -
Ahy20g2024 487 SMART pbh1 340 361 IPR006626 -
Ahy20g2024 487 Pfam Glycosyl hydrolases family 28 180 460 IPR000743 GO:0004650|GO:0005975
Ahy20g2024 487 Gene3D - 75 461 IPR012334 -
Ahy20g2024 487 SUPERFAMILY Pectin lyase-like 79 473 IPR011050 -
Ahy20g2024 487 PANTHER PECTIN LYASE-RELATED 14 480 - -
Ahy20g2024 487 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 14 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2024 Ahy-Chr20 114493998 114497733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2024 1 485 Glycoside Hydrolase AT4G33440 65.638 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2024 - - ahf:112715929 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2024 20 114493998 114497733 Ahy20g2024 20 114493998 114497733 ECH
Ahy20g2024 20 114493998 114497733 Ahy10g1588 10 92200273 92204106 hybridization