Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2023 ATGAGTATGAATTTATGTTCTTCCTTTTTCTTCATGTTCTTCATTGCGACCCCTTTTACCTGCATCATCCATGTTTGCTCAGCAGATTGTGATAATCTACAAGATACATGCCCGACATCTTTGCCAGAAAAGGAAACCATATTCATCAATGGACTACCCTGCAAGAGTAAAGACAACAACACTGCTCAGGATTTCAAGACCGCAGAACTGACAAGGGCTGGTCCTAGAGACAATTTCTTCGGCTCCTCAATGAACATAGTTAGTGCTTCCAAGTTCCCCGGCCTTAACACGGTTGGCATCTCGATTAGTAGAATTGACATTGAAGTGGACGGGATGGTAAACCTTCACAATCATCCGAGAGCCACCGAGATGATCTATGTCAACCAAGGGGTGCTGGCAGCAGCATTTCTTGATACGCAAAACCAGCTTTTCCAAAAGTCTCTGAGAGCAGGCGATGTGTTTGTGATCCCTAAAGGATTGTTCCACTTCTTTCTGAATCGCGGTTCAGCTGCGGCAGTTATCTTCTCTGTTTTCAATAGCCAGAATCCAGGGTTGGGCTCCCTCAGTGCTTCTACACCTTCTGAGACCACATTGGAGTCGGTAGAGAACCTAAAGCGGAAACTCATAACCTCATTTTCTGACTTAGAACTTCATCATGGCACTACTGATTTGGCCTCACAAATACTAGAGATCATATACAGTTAG 705 0.444 MSMNLCSSFFFMFFIATPFTCIIHVCSADCDNLQDTCPTSLPEKETIFINGLPCKSKDNNTAQDFKTAELTRAGPRDNFFGSSMNIVSASKFPGLNTVGISISRIDIEVDGMVNLHNHPRATEMIYVNQGVLAAAFLDTQNQLFQKSLRAGDVFVIPKGLFHFFLNRGSAAAVIFSVFNSQNPGLGSLSASTPSETTLESVENLKRKLITSFSDLELHHGTTDLASQILEIIYS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2023 234 ProSitePatterns Germin family signature. 111 124 IPR019780 GO:0030145
Ahy20g2023 234 Gene3D Jelly Rolls 28 213 IPR014710 -
Ahy20g2023 234 SMART Cupin_1_3 68 205 IPR006045 -
Ahy20g2023 234 CDD cupin_OxOx 29 191 - -
Ahy20g2023 234 PRINTS Germin signature 146 166 IPR001929 GO:0030145
Ahy20g2023 234 PRINTS Germin signature 116 136 IPR001929 GO:0030145
Ahy20g2023 234 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Ahy20g2023 234 Pfam Cupin 72 189 IPR006045 -
Ahy20g2023 234 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 21 213 - -
Ahy20g2023 234 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 213 - -
Ahy20g2023 234 SUPERFAMILY RmlC-like cupins 63 184 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2023 Ahy-Chr20 114491914 114493141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2023 24 184 Miscellaneous Gene Families AT3G05930 41.975 3.63e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2023 - - mtr:MTR_3g096330 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2023 20 114491914 114493141 Ahy10g1587 10 92197593 92198584 hybridization