Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1965 ATGGCCACCAAAGCCTTCTCCGTATCCTTCGCTGACGTCACCAACAGCGTCAGCTTCCCCTTCGCTTCTAAACCCCCAACCGCATCTCCGAGACACTGCGTTTTCTCACTCACTTGCTCTGCCGGTAAGGGTGAGAGGCCTTGGAAAACTTCGGATGCAAGGCTTGTGCTTCAAGATGGTTCAATCTGGAATGCCAAATCATTTGGCGCTTCTGGAACCCAAGTTGGTGAAGTTGTTTTCAATACATCATTGACTGGGTATCAAGAAATTTTGACGGATCCTAGCTATGCTGGCCAGTTTGTGCTCATGACAAATCCGCATATTGGGAATACCGGTGTAAATTTTGATGATGAGGAATCAAGACGGTGCTTCCTTTCTGGTCTAGTTATTCGGAGTTTGAGTATCAGTACATCAAATTGGAGATGTGTTAAAGCACTCGGTGATTACTTAGCGGAAAGGAACATCATGGGAATCTATGATGTTGACACGCGTGCAATTACACGAAGATTGAGACAAGATGGCAGTCTTATTGGTGTCTTGAGCACTGATAATTCTAAAACAGAACAGGAACTACTGCAGATATCTCAGTCGTGGAACATTGTTGGTATTGATCTAATAAGCGGCGTCTCATGCATGTCTCCACTTGAATGGATTGATAAAACAGAAGATGAATGGGAATTCCGTCCAAATAAAGATCCAGCTGGAGAAACTTTCCATGTAGTTGCTTATGATTTTGGGATTAAGCATAATATACTTAGGCGCTTAGCATCATACGGATGTAAAATTACAGTTGTGCCGTCTACATGGCCAGCATCAGAAACTTTGAAGATAAAGCCAGATGGGGTCATTTTAAGCAATGGCCCTGGAGATCCATCTGCCATTCCTTATGCTGTTGAAACTGTAAAGAATATTCTCGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGTTAGGCCAGGCTTTAGGTGGCAAGACCTTCAAGATGAAATTTGGTCACCATGGAGGAAACCATCCTGTTCGCAACCTTAGAACTGGCCGTGTCGAAATTAGTGCTCAGAACCACAACTATGCGGTGGACCCTGCCACATTGCCAAAGGGGGTGGAGGTTACACATATCAATCTTAATGATGGAAGTTGTGCTGGTCTAGCCTTTCCTTCTCAAAGAGTTATGTCCCTTCAATACCACCCTGAAGCATCCCCTGGACCTCATGATTCTGACTATGGTTTTAGAGAGTTTGTGCAGTTAATGATGCAGGATAGAAAGAAAGCTAATAAAAGCCTTAAACTGGTAGCAGCGCAAGCTTCCGATGCATAG 1323 0.4414 MATKAFSVSFADVTNSVSFPFASKPPTASPRHCVFSLTCSAGKGERPWKTSDARLVLQDGSIWNAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRRCFLSGLVIRSLSISTSNWRCVKALGDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTDNSKTEQELLQISQSWNIVGIDLISGVSCMSPLEWIDKTEDEWEFRPNKDPAGETFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKIKPDGVILSNGPGDPSAIPYAVETVKNILGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRTGRVEISAQNHNYAVDPATLPKGVEVTHINLNDGSCAGLAFPSQRVMSLQYHPEASPGPHDSDYGFREFVQLMMQDRKKANKSLKLVAAQASDA* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1965 440 Hamap Carbamoyl-phosphate synthase small chain [carA]. 51 423 IPR006274 GO:0004088|GO:0006207|GO:0006541
Ahy20g1965 440 CDD GATase1_CPSase 240 416 IPR035686 -
Ahy20g1965 440 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 35 422 - -
Ahy20g1965 440 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 35 422 - -
Ahy20g1965 440 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 239 425 - -
Ahy20g1965 440 Gene3D - 200 423 IPR029062 -
Ahy20g1965 440 PRINTS Glutamine amidotransferase superfamily signature 309 320 - -
Ahy20g1965 440 PRINTS Glutamine amidotransferase superfamily signature 394 407 - -
Ahy20g1965 440 PRINTS Glutamine amidotransferase superfamily signature 282 291 - -
Ahy20g1965 440 PRINTS Anthranilate synthase component II signature 394 407 - -
Ahy20g1965 440 PRINTS Anthranilate synthase component II signature 282 291 - -
Ahy20g1965 440 PRINTS Anthranilate synthase component II signature 309 320 - -
Ahy20g1965 440 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 53 420 IPR006274 GO:0004088|GO:0006207|GO:0006541
Ahy20g1965 440 SMART CPSase_sm_chain_2 51 181 IPR002474 -
Ahy20g1965 440 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 55 179 IPR002474 -
Ahy20g1965 440 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 52 195 IPR036480 -
Ahy20g1965 440 SUPERFAMILY Class I glutamine amidotransferase-like 216 421 IPR029062 -
Ahy20g1965 440 Gene3D - 50 199 IPR036480 -
Ahy20g1965 440 Pfam Glutamine amidotransferase class-I 243 417 IPR017926 -
Ahy20g1965 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 240 254 - -
Ahy20g1965 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 279 293 - -
Ahy20g1965 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 351 362 - -
Ahy20g1965 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 309 325 - -
Ahy20g1965 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 326 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1965 Ahy-Chr20 110280174 110283435 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1965 K01956 - gmx:100776931 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1965 20 110280174 110283435 Ahy20g1965 20 110280174 110283435 ECH
Ahy20g1965 20 110280174 110283435 Ahy10g1532 10 89166693 89169905 hybridization