Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1913 ATGTCGTCGTCGTCCTCCTCCTCCTCCTCTTCCGAATCGGAATCAGAACCTCCGACGGGCATATGCCTGATCCCCTCCCTACCTGATGACGTGGCACTGAACTGCCTAGCACGCATCCCTAGGCCCTACCACCCCGTCCTCTCCCTTGTCTCGAAGCCCATCCACTCCCTTTTCTCCTCCCCTCACTTTTACCACGCCCGCTTTCTTCTTAACTCCACCCAACACCACCTCTACCTCACGCTCCGCTCACGCGCCTCTACCCTCCTCTGGTTCACCCTCCATCGAACCCCGTCCCGCATCCTCCTCGTCCCGCTCCCCTCTCAACCCTCCCCCGCCATCGGCTCTGCCTACGCCGTTCTCGGTTCCACCATCTACGTCATCGGCGGCTCCATTAACGACGTTCCCTCCTCTCACATCTGGCTCCTCGACTGCCGCTTCCACCGATGGCGACGTGGACCCTCTATGCGCGTCGGCCGCGAGTTCGCCGCTGCGGGAGTCGTCGACGGAAAGATTTACGTCATTGGAGGCTGCGTCGCTGACAATTGGGCCAGGTCGGCCAACTGGGCGGAGGTTCTTGACCCCGCCTCCGAGAAATGGGAGCGCGTGGCGAGCCCCGCGGAGGTTCGGGAGAAGTGGATGCACGCAAGCGCCGTGGTGGACGGCAAGGTGTACGCCATGGCGGATCGCGGCGGCATCGCGTTAGATCCCAGATGCGGCGCTTGGGAGAGCGTGGGAACGGAGCTGGACCTCGGGTGGCGAGGGAGGGCGTGCGTGGTGGATGATATTCTTTATTGCTACGATTACTTGGGGAAGATTAAAGGGTTCGATGTGAAGAGTGGGGTATGGAAAGAGCTGAAGGGGTTGCATAAGGGGTTGCCTCGGTTTCTGTGTGGTGCTACCATGGCTGATTTGGGTGGGAAGTTGGTTGTGGTGTGGGAGTGTGGTGGTGGGAATGGGAAAGACATGGACATTTGGTGTGCTGAGATTCAAGTTAGCAAGAAGAATGTAGAACTGTGGGGTGAGGTTGATTGGTTCCAGAAGGTTCTTTCTGTTCCAAAAGGCTCTTCTATTGTGCACTGTTCTTCAGTTGCTTTGTGA 1098 0.5856 MSSSSSSSSSSESESEPPTGICLIPSLPDDVALNCLARIPRPYHPVLSLVSKPIHSLFSSPHFYHARFLLNSTQHHLYLTLRSRASTLLWFTLHRTPSRILLVPLPSQPSPAIGSAYAVLGSTIYVIGGSINDVPSSHIWLLDCRFHRWRRGPSMRVGREFAAAGVVDGKIYVIGGCVADNWARSANWAEVLDPASEKWERVASPAEVREKWMHASAVVDGKVYAMADRGGIALDPRCGAWESVGTELDLGWRGRACVVDDILYCYDYLGKIKGFDVKSGVWKELKGLHKGLPRFLCGATMADLGGKLVVVWECGGGNGKDMDIWCAEIQVSKKNVELWGEVDWFQKVLSVPKGSSIVHCSSVAL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1913 365 Gene3D - 70 343 IPR015915 GO:0005515
Ahy20g1913 365 SMART kelc_smart 123 169 IPR006652 GO:0005515
Ahy20g1913 365 SMART kelc_smart 170 221 IPR006652 GO:0005515
Ahy20g1913 365 Pfam Kelch motif 161 204 IPR006652 GO:0005515
Ahy20g1913 365 Pfam Kelch motif 115 156 IPR006652 GO:0005515
Ahy20g1913 365 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 11 349 - -
Ahy20g1913 365 SUPERFAMILY Kelch motif 87 331 IPR015915 GO:0005515
Ahy20g1913 365 SUPERFAMILY F-box domain 16 83 IPR036047 GO:0005515
Ahy20g1913 365 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP6 11 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1913 Ahy-Chr20 106693664 106695200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1913 27 349 Miscellaneous Gene Families AT4G33900 36.467 3.84e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1913 - - gmx:100798508 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1913 20 106693664 106695200 Ahy10g1492 10 85160810 85162299 hybridization