Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1892 ATGGCTGCGCGATCCCTATTGACCCGAAAAACCCTAGCCACAGTGCTCCGCCGTGACTCCACGGCACTGGGCGCACAAGCAGCAGCACATTCGCGCGGACTTCACACTTTCACGCTGCCGGATCTGAATTACGACTACGGCGCACTGGAGCCGGCTATAAGCGGGGAGATCATGGAGATTCACCACAAGAAGCACCATCAGACTTACGTCACTAATTACAACAAGGCCCTCGAGCAGCTTCACGATGCTCTCCCTAAGGGCGATGCTTCTACCATCGTTAAGCTCCAGAGTGCCATCAAGTTCAACGGCGGAGGTCATATCAACCACTCTATTTTCTGGAAGAATCTAGCTCCGCAACGGGAAGGAGGCGGCGAGCCACCCAAGGGTTCGCTGGGATGGGCCATTGACGAGCATTTTGGCTCTTTCGAAAAATTGGTACAGAAGGTGAACGCAGAGGGTGCTGCCTTACAAGGGTCTGGATGGGTGTGGCTCGGTCTAGACAAGGAGTTTAAGAAGCTTGTAGTTGAAACCACTGCCAATCAGGACCCACTGATTACAAAGGGACCAGGATTGGTTCCATTGCTTGGCATAGACGTTTGGGAGCATGCATATTACTTACAGTACAAGAATGTCAGACCAGACTATCTGAACAACATTTGGAAAGTTATTAACTGGAAATATGCCAGCGAAGTGTATGAAAAAGAGAGCTCTTAA 714 0.507 MAARSLLTRKTLATVLRRDSTALGAQAAAHSRGLHTFTLPDLNYDYGALEPAISGEIMEIHHKKHHQTYVTNYNKALEQLHDALPKGDASTIVKLQSAIKFNGGGHINHSIFWKNLAPQREGGGEPPKGSLGWAIDEHFGSFEKLVQKVNAEGAALQGSGWVWLGLDKEFKKLVVETTANQDPLITKGPGLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVINWKYASEVYEKESS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1892 237 ProSitePatterns Manganese and iron superoxide dismutases signature. 198 205 IPR019833 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 Pfam Iron/manganese superoxide dismutases, C-terminal domain 127 229 IPR019832 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 Gene3D Fe,Mn superoxide dismutase (SOD) domain 54 117 IPR036324 -
Ahy20g1892 237 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 122 234 IPR036314 -
Ahy20g1892 237 PANTHER SUPEROXIDE DISMUTASE 1 235 - -
Ahy20g1892 237 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 34 118 IPR036324 -
Ahy20g1892 237 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 36 117 IPR019831 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 PRINTS Manganese superoxide dismutase signature 196 208 IPR001189 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 PRINTS Manganese superoxide dismutase signature 156 164 IPR001189 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 PRINTS Manganese superoxide dismutase signature 100 113 IPR001189 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 PRINTS Manganese superoxide dismutase signature 40 51 IPR001189 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 PRINTS Manganese superoxide dismutase signature 61 74 IPR001189 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 PIRSF MnSOD_FeSOD 8 237 IPR001189 GO:0004784|GO:0006801|GO:0046872
Ahy20g1892 237 Gene3D - 118 237 IPR036314 -
Ahy20g1892 237 PANTHER SUPEROXIDE DISMUTASE 2 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1892 Ahy-Chr20 105128446 105130927 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1892 K04564 - gmx:100101896 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1892 20 105128446 105130927 Ahy10g1469 10 83525207 83527705 hybridization