Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1629 ATGGCTTCCTTCACCCTCAGACTCACCCCTTCTTCTGCCTCTTCCATTAACAAACCTATACTCGCTTCTTTTTCTTCCCACCTTAACCCACAACGCGCCTCATTCCCTTTCTCAAACAACCACAACTCCCTAAACCTTCAAACCCTGCATCATCATCATCATCATCATCATCATCACCATCATCATCTTTTCCCCGCGATTCGCCCTTTCCTTCAACAAACCAGAGCTACACCAGTAACAAAAGACCTATGGGAAAATTTGATTCTGAACAGTGAAACCCCAGTCCTTGTTGAATTCTATGCAAATTGGTGTGGCCCGTGCAAGATGGTACACCGTGTGATGGATGAGATCGAAATTGAGTATGCTGGGAAACTCAAGTGCTTCAAGGTGAACACAGACACTGATATGGAAATTGCTGATGACTACGAAATTAAGGCTGTACCAGTGGTTCTGCTGTTTAAAAATGGCGAGAAATGTGATTCTGTAATTGGCACTATGCCAAAGGAGTTTTATGTGGCTGCCATTGAGAGGGTGCTCAAGTCTTAA 546 0.4414 MASFTLRLTPSSASSINKPILASFSSHLNPQRASFPFSNNHNSLNLQTLHHHHHHHHHHHHHLFPAIRPFLQQTRATPVTKDLWENLILNSETPVLVEFYANWCGPCKMVHRVMDEIEIEYAGKLKCFKVNTDTDMEIADDYEIKAVPVVLLFKNGEKCDSVIGTMPKEFYVAAIERVLKS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1629 181 CDD TRX_family 84 176 - -
Ahy20g1629 181 TIGRFAM thioredoxin: thioredoxin 81 177 IPR005746 GO:0015035
Ahy20g1629 181 PANTHER THIOREDOXIN M3, CHLOROPLASTIC 26 180 - -
Ahy20g1629 181 SUPERFAMILY Thioredoxin-like 64 179 IPR036249 -
Ahy20g1629 181 PRINTS Thioredoxin family signature 95 103 - -
Ahy20g1629 181 PRINTS Thioredoxin family signature 103 112 - -
Ahy20g1629 181 PRINTS Thioredoxin family signature 143 154 - -
Ahy20g1629 181 ProSitePatterns Thioredoxin family active site. 96 114 IPR017937 -
Ahy20g1629 181 Pfam Thioredoxin 78 175 IPR013766 -
Ahy20g1629 181 ProSiteProfiles Thioredoxin domain profile. 64 181 IPR013766 -
Ahy20g1629 181 Gene3D Glutaredoxin 76 181 - -
Ahy20g1629 181 PANTHER GEO12009P1 26 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1629 Ahy-Chr20 64213956 64217298 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1629 K03671 - gmx:100306680 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1629 20 64213956 64217298 Ahy20g1629 20 64213956 64217298 ECH