Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1543 ATGGCGCAGGTACAAGCCGAAGAGAAGATGATCCCTGAGGATCCAGAAAAAGGTGGTAGCGGGGGTGCTGCTGCTGCACAAGAGAGTGCGCAATCGGGTTTCAAGTTCAATGCGCAAGCACCTGAATTTGTTCCAAGATCGCATACGCAGGTTCCGATTTCCGGTTATTTCTATCCCTGCTTTCAGATTCTTGGTGGATCTTCTGATTCGGATTGGTTCTACGTTGGAGATCATGATCCTGCCGCATGTTTGATCCCTGCCGCTGCCACCTCCGCCATCGCCGCTGCTCCAATCCCTAATTGCTCCAACAAGAATGTCCTCACCCCTGATCTCCAGCAAAAGATCATCAAGCAGGTGGAGTACCAGTTTAGTGATATGAGCTTACTGGCAAATGAATCTTTTCAGAAACAGGTGAATAAAGATCCTGAAGGTTATGTTCCAATAAGCCTAATTGCTTCAACCAAAAAGATCAAATCCCTAACTAATAACACTCATCTAATCACCCAGGCTCTCCGTTCATCTTCGAAAGTTGTTTTGAGTCCTGATGGCAAGAAGGTTAAACGTAAAAACCCTTTCACCGAAAAGGATAAAGAGGAATTGCAGTCTCGTACTGTTGTGGCAGAGAATTTACCGGATGATCATTCCCATCAAAATATTCAGAAAATATTCTCTGTAGTTGGAAGTGTGAAAACAATTAGAATATGCCATCCCCCAGAATCCAATTCTTCACGTCCAAAGGGTGATTTTTTCATCAGTAACAAGCTTCATGCACTTGTGGAGTATGAGACACCGGATGTAGCTGAGAAAGCTGTTGAGAAGTTAAACGATGAAAGGAACTGGCGGAAAGGTATGCGAGTAAGGGTGCTGTTTAGATGTTCGCCCAAATCTGTCCTGAAGAGCAGAAAGTCGGATTTCGATGGCTATTTGGATGACGATGACATGCTAAATTCTGATTCTGCTGAGGATTCGTCTCATTCAAACAACACTGAATTAACTGCTGACACTAATGTTGACGAAAATTCAGTAGGATCGAAGAAAGGATGGGCTAGAGGCCGTGGAAAGGGAAGAGGACGCACTCAAATTCACGCTGGTCGTGGCCTACTTGCGCCACCTTCTCAACCGAGCAGCGTTGTCCTTTGCGAAGCATCTACTAAATCCAACACCAAGGGCCCGCGAATGCCAGATGGGACAAGAGGTTTCACCATGGGGCGGGGCAAGCCGATCAACTCTCCCGCTCTAGCCTCTTCGCCTCAAGAGTGA 1260 0.4635 MAQVQAEEKMIPEDPEKGGSGGAAAAQESAQSGFKFNAQAPEFVPRSHTQVPISGYFYPCFQILGGSSDSDWFYVGDHDPAACLIPAAATSAIAAAPIPNCSNKNVLTPDLQQKIIKQVEYQFSDMSLLANESFQKQVNKDPEGYVPISLIASTKKIKSLTNNTHLITQALRSSSKVVLSPDGKKVKRKNPFTEKDKEELQSRTVVAENLPDDHSHQNIQKIFSVVGSVKTIRICHPPESNSSRPKGDFFISNKLHALVEYETPDVAEKAVEKLNDERNWRKGMRVRVLFRCSPKSVLKSRKSDFDGYLDDDDMLNSDSAEDSSHSNNTELTADTNVDENSVGSKKGWARGRGKGRGRTQIHAGRGLLAPPSQPSSVVLCEASTKSNTKGPRMPDGTRGFTMGRGKPINSPALASSPQE* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1543 419 MobiDBLite consensus disorder prediction 376 391 - -
Ahy20g1543 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 293 IPR000504 GO:0003723
Ahy20g1543 419 MobiDBLite consensus disorder prediction 1 30 - -
Ahy20g1543 419 Gene3D - 194 297 IPR012677 -
Ahy20g1543 419 ProSiteProfiles La-type HTH domain profile. 105 196 IPR006630 -
Ahy20g1543 419 PRINTS Lupus La protein signature 197 213 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy20g1543 419 PRINTS Lupus La protein signature 253 271 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy20g1543 419 PRINTS Lupus La protein signature 118 135 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy20g1543 419 PRINTS Lupus La protein signature 144 159 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy20g1543 419 PRINTS Lupus La protein signature 175 188 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy20g1543 419 SUPERFAMILY RNA-binding domain, RBD 187 291 IPR035979 GO:0003676
Ahy20g1543 419 PANTHER LA-RELATED PROTEIN 6C 24 410 - -
Ahy20g1543 419 MobiDBLite consensus disorder prediction 320 342 - -
Ahy20g1543 419 Gene3D - 108 193 IPR036388 -
Ahy20g1543 419 Pfam La domain 115 172 IPR006630 -
Ahy20g1543 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Ahy20g1543 419 MobiDBLite consensus disorder prediction 316 419 - -
Ahy20g1543 419 SMART la 109 189 IPR006630 -
Ahy20g1543 419 Pfam Ataxin-2 C-terminal region 34 48 IPR009818 -
Ahy20g1543 419 CDD RRM_La_like_plant 203 289 IPR034878 GO:0003723
Ahy20g1543 419 PANTHER LUPUS LA PROTEIN-RELATED 24 410 IPR045180 -
Ahy20g1543 419 SUPERFAMILY "Winged helix" DNA-binding domain 107 192 IPR036390 -
Ahy20g1543 419 SMART rrm1_1 204 289 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1543 Ahy-Chr20 47044880 47048159 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1543 K15191 - gmx:100796786 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1543 20 47044880 47048159 Ahy20g1543 20 47044880 47048159 ECH