Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1409 ATGGTTAAGAAAAAGGAGATGAAAAAGGAGATCTACAAGTACAAGGTGTTGAATTTCTTGACCAGAAAATTTGAATTGAAAAAGCAAGAACCATCTTTGGACATTAAGGAAGCATTTCACATGTTTGCAAAAGGTGGGGAATACATGTCAAATGATCAGCTTCTAGGGTTCATGTTGGAGCATCAAGGTGATAAGAACTGCACCTTAATGGATTTGGAGGTGGTTTTGTTGCAAATTGCTGGGAATTCCAACACTACAAGTAGGGAACAAGGGCTCAGCCTCATGGAGTTCATCAATTTTCTGCTTCTTGATGATTTCAATGGTCCATTGAAAACTGAGGTTCACCATGATATGAGTGCTCCCTTGTCACATTACTTTATGTACACTGGACACAATTCCTATCTGACTGGGAATCAACTCACAAGTGATTGCAGTGACAAGCCGATTATTGAGGCTTTGCAACAAGGAGTTCGAGTGATTGAACTCGATCTGTGGCCATCTTCAAATGAAGATGGTATTAAAGTAGTTCACGGAAGGACTCTTACCACTCCAGTTTTACTAACCAAATGTCTGGAATCCATAAAGAAATATGCTTTTGTCAAATCTGATTTTCCAGTGATACTAACTTTGGAAGACCACTTAACATCAAAACTTCAGGCCAAATTCACAGAAAAAGCAACTCAAATATTTGGAGACATGCTTTATTATCCCAAGACAGATTACTTGACAGAATTCCCTTCACCAGAATCATTGAAAAATCTAGTTGTTATATCCACCAAACCTCCTAAAGAATATGCTCATTCTAATAGTGTTATGGACAAGGGCAGCAATAATAACCATATGCAAAATGAAAGCGAACCGTCCTCCGGAGAAGAAGAAGAATTATGGAACGTGGAATTGCCAGATTCCATGGCTCAATTGACAACTGAGGAGAATAATGTAAGTGATGAAGACACAAATATATGTGATTTCAAACCAAACCAGCAAAATGCACCTGAATACAAACACTTGATTGCAATCCATGGTGGGAAATCAAAAGGTTCTGTGAAGGATCGACTGAAAGCCGATAGCGAAGTAGTTAAACGGCTAAGTTTGAGTGAGAAGAAACTCAAAAGTGCTTCTGAATCTCATGGAAAAGACATTATTAGGTTCACACAGAAAAATATACTGAGAGTCTATCCTAAAGGAGAACGCATCAAATCCACAAACTTTCGGCCGCATTTAGGGTGGATGTATGGAGCTCAAATGGTGGCATTCAATATGCAGGGGCATGGCAAATCGCTATGGCTGATGCAAGGAATGTTTAGAGCAAATGGAGGATGTGGTTATGTTAAAAAGCCCGAATTTCTGACCCGAAAAAATTCACATGAAGACGAGTTTGATCCTAGAAGAACATTGCCAGTGAAGCAGATATTAAGGGTAAATGTTTACCTAGGTGTTGGCTGGAGATCCGATTTCGGTGCAACACACTTTGATCTATTTTCTCCTCCAGATTTTTACACCAAGGTATGTCTTGTTGGGGTGCCAACTGATTGTGTAAAGAAAAGAACAAGGGTAATCAAGGACAATTGGCTTCCTGTTTGGGATGAAGAGTTTGAATTTCCTTTAACAGTTCCTGAGCTTGCTTTGCTGCGGATCGAAGTAAAGGATAAAGACAAGGGGAAGGATGATTTTGCAGGGCAGACTTGTTTACCAGTATCCGAACTACGACTCGGATTCCGGTCGGTCGCCCTGCATGACAGGAAGGGAAAGAAATTTAAATCTGTGAAGCTTCTAATGAGGTTTCAGCTTGAAATATTTTGA 1803 0.3982 MVKKKEMKKEIYKYKVLNFLTRKFELKKQEPSLDIKEAFHMFAKGGEYMSNDQLLGFMLEHQGDKNCTLMDLEVVLLQIAGNSNTTSREQGLSLMEFINFLLLDDFNGPLKTEVHHDMSAPLSHYFMYTGHNSYLTGNQLTSDCSDKPIIEALQQGVRVIELDLWPSSNEDGIKVVHGRTLTTPVLLTKCLESIKKYAFVKSDFPVILTLEDHLTSKLQAKFTEKATQIFGDMLYYPKTDYLTEFPSPESLKNLVVISTKPPKEYAHSNSVMDKGSNNNHMQNESEPSSGEEEELWNVELPDSMAQLTTEENNVSDEDTNICDFKPNQQNAPEYKHLIAIHGGKSKGSVKDRLKADSEVVKRLSLSEKKLKSASESHGKDIIRFTQKNILRVYPKGERIKSTNFRPHLGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYVKKPEFLTRKNSHEDEFDPRRTLPVKQILRVNVYLGVGWRSDFGATHFDLFSPPDFYTKVCLVGVPTDCVKKRTRVIKDNWLPVWDEEFEFPLTVPELALLRIEVKDKDKGKDDFAGQTCLPVSELRLGFRSVALHDRKGKKFKSVKLLMRFQLEIF* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1409 600 CDD C2_PLC_like 469 598 - -
Ahy20g1409 600 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 471 596 IPR035892 -
Ahy20g1409 600 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 9 599 - -
Ahy20g1409 600 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 357 449 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ahy20g1409 600 Pfam C2 domain 472 570 IPR000008 -
Ahy20g1409 600 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 364 450 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ahy20g1409 600 Gene3D Phosphatidylinositol (PI) phosphodiesterase 113 462 IPR017946 GO:0006629|GO:0008081
Ahy20g1409 600 PRINTS Phospholipase C signature 121 139 IPR001192 GO:0035556
Ahy20g1409 600 PRINTS Phospholipase C signature 244 261 IPR001192 GO:0035556
Ahy20g1409 600 PRINTS Phospholipase C signature 564 574 IPR001192 GO:0035556
Ahy20g1409 600 PRINTS Phospholipase C signature 410 428 IPR001192 GO:0035556
Ahy20g1409 600 PRINTS Phospholipase C signature 147 167 IPR001192 GO:0035556
Ahy20g1409 600 PRINTS Phospholipase C signature 389 410 IPR001192 GO:0035556
Ahy20g1409 600 ProSiteProfiles C2 domain profile. 452 580 IPR000008 -
Ahy20g1409 600 MobiDBLite consensus disorder prediction 265 293 - -
Ahy20g1409 600 Gene3D - 27 108 - -
Ahy20g1409 600 Gene3D C2 domain 466 600 IPR035892 -
Ahy20g1409 600 SUPERFAMILY EF-hand 31 118 IPR011992 -
Ahy20g1409 600 SMART plcx_3 116 260 IPR000909 -
Ahy20g1409 600 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 116 260 - -
Ahy20g1409 600 SMART C2_3c 471 578 IPR000008 -
Ahy20g1409 600 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 9 599 IPR001192 GO:0035556
Ahy20g1409 600 SUPERFAMILY PLC-like phosphodiesterases 116 452 IPR017946 GO:0006629|GO:0008081
Ahy20g1409 600 SMART plcy_3 334 451 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ahy20g1409 600 MobiDBLite consensus disorder prediction 270 285 - -
Ahy20g1409 600 Pfam Phosphatidylinositol-specific phospholipase C, X domain 118 260 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1409 Ahy-Chr20 34339411 34343516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1409 12 598 Acyl Lipid Metabolism Gene Families AT2G40116 53.795 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1409 K05857 - gmx:100803435 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1498 17 28596129 28600558 Ahy20g1409 20 34339411 34343516 ECH
Ahy20g1409 20 34339411 34343516 Ahy20g1409 20 34339411 34343516 ECH
Ahy20g1409 20 34339411 34343516 Ahy10g1040 10 23754218 23758353 hybridization
Ahy20g1409 20 34339411 34343516 Ahy17g0932 17 11325368 11328737 PCT
Ahy20g1409 20 34339411 34343516 Ahy7g0752 7 9085489 9088890 PCT
Ahy17g0932 17 11325368 11328737 Ahy20g1409 20 34339411 34343516 PCT
Ahy7g0752 7 9085489 9088890 Ahy20g1409 20 34339411 34343516 PCT