Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1222 ATGGAATCATCGTCTCCGATTTGCGAATCCCAAACGGACCCTCTCTCAACCCCTTCCTTCTCCTCTCTCAACGATCTCTGTCATGACCTTACCTCCCTACAAGACCTCGCCACTCGCGGCGCGTGGCGCTCCGTCATCGACAAGGTCTCACGCGCCAGGGCCCTCAACCTCCTTCAAAACCCTCACGACCATCTCACCTACCTTGCCTATAATGCCCTTGCCTTCGCTAAACTGCGTCGTTTCAACGAAGCCTCCGCAGAGCTTGATTCCATGGAGGACCTCGATAGCCACCACTACCGCTACGAAACCTATCCCAAAATCTATCATAACCGAACCGGTTCCATGGTCCCCTTCTCCCTTCGCTGGCTCCACGCTCTTCTTCCCATCAAATTAGGGCACAGAAATCAAGGTGTGGATCGCCTTTACACTCTTCTCGATTTTGTTCGCCAGAAGATCAGGGACAAGGAGACGAACAATCTGCAAGATTCGGTTCAGATCTGGAAGAAGAGAGAGGTATTCGTTGTGAATTGCATAATTGGGAACCATTTGAGTCACAAGGAGTTCACCGTGTGCTTGAGCTTGTTGAAGGAGCTGCTTTCGCGTGACTCTTTGGATCCATTGCTGGTTTCCCAGCTTGGCTATGTTCAGTTGCAGATTGGGGACTTGGAAGGTGCAAAGGTTTCGTTCTCCAAGGTTGAGGGTTTGGTAGAGGAAGCAAAGATGGGTAATAACAATGGTTCGTTGTTGTTGAGTGAGATTGAGATGATGAACCTTGTGAATAGAAACAAGGCTTTGGTGTATTTGGTTGGGAAGGATTATGTCTCCGCTGTTAGAGAGTATGAGGAGTGCATTGAGAGGGATGGTTCTGATGTTGTTGCCTTGAACAACAAGGCATTGTGTTTGATGTATCTGAGGGATTTGTCTGATTCCATCAAGGTACTTGAGAATGCACTTGAGACGGTTCCCACCGTGGCACTCAATGAGACGCTTGTTGTTAACTTGTGTAGCATGTATGAGCTGGCCTATGTGAATCACTCGGATATTAAGAGGACACTGAGCAATTGGATCGCTCGTGTCGCCCCCGACGACTTTGATGCAACTTGCACTCGGACATGA 1116 0.4901 MESSSPICESQTDPLSTPSFSSLNDLCHDLTSLQDLATRGAWRSVIDKVSRARALNLLQNPHDHLTYLAYNALAFAKLRRFNEASAELDSMEDLDSHHYRYETYPKIYHNRTGSMVPFSLRWLHALLPIKLGHRNQGVDRLYTLLDFVRQKIRDKETNNLQDSVQIWKKREVFVVNCIIGNHLSHKEFTVCLSLLKELLSRDSLDPLLVSQLGYVQLQIGDLEGAKVSFSKVEGLVEEAKMGNNNGSLLLSEIEMMNLVNRNKALVYLVGKDYVSAVREYEECIERDGSDVVALNNKALCLMYLRDLSDSIKVLENALETVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDATCTRT* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1222 371 SUPERFAMILY TPR-like 195 326 IPR011990 GO:0005515
Ahy20g1222 371 Gene3D Tetratricopeptide repeat domain 174 353 IPR011990 GO:0005515
Ahy20g1222 371 PANTHER F-BOX DOMAIN, TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN PROTEIN-RELATED 14 370 - -
Ahy20g1222 371 PANTHER D-ALANYL-D-ALANINE CARBOXYPEPTIDASE 14 370 - -
Ahy20g1222 371 SMART tpr_5 291 324 IPR019734 GO:0005515
Ahy20g1222 371 SMART tpr_5 257 290 IPR019734 GO:0005515
Ahy20g1222 371 SMART tpr_5 206 239 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1222 Ahy-Chr20 22830207 22833039 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1222 K20309 - gmx:100779691 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1222 20 22830207 22833039 Ahy10g0901 10 14923444 14926369 hybridization