Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1172 ATGAGAGACACTTCACCAGAAAGCAGAGGTTGTGGTTTGCTATCATCATTGCTTCGCAGGCGCGGCTCATCTAGGAGCAAAACTGAAAGATATTCTGGTAATGATGATGCTCATAATCATGGGAAGCAACCATCAAAAACCAAAGATTCGAAACGGCCACAGAGTGATGTCTCTGATGATGCCCGAAGATCTGCTTCTTCTGCATCAAGCAATTCCAACACTCCCCAGAGCCAAAAGCATGTAGTTGTAAGTGTAAACCAAAACCACCAAAGAAAACAACAACAACATGATGAGGCAGCAGCAGCATCAATGGCAGTGTGTTCGTCATCTAGGTCGTCGAAGGTGTCACCTGTACAAGGATATGTCAATCAGGGAAGAAAGGTTCCAAAAGATGCCGTTGGAATATCCGGTGAGCTTGATAGCATGTTAAACGATTACCAGAAGCCGAAGGGAAGCAACAAGCTTGTTCGAGCTTCTAGCAATGTGATGATATATGGTAACTTAGGTAACCTTGGACAAGGAGGAGGAGGAACAAATTATCCTAGTTCAAACATTCCAATGGATAAAGTGGAAAATGGTGGTGGTAGTAACAATAATAGGAATAAAAAGGTTACTAGGAATAGTAAAGAAGAATCAGGTTCACTTTGTAGGGCTGTGTCTACTAGAATGGACCCTGAACAGTTGAAGATAATGGGGAATGAGGATTATAAGAATGGGAACTTTGCTGAGGCATTGGCTCTGTATGATGCAGCAATTGCAATTGATCCTAATAAGGCTGCTTATAGAAGCAATAAAAGTGCAGCATTAACAGCTCTTGGAAGGCTTTTGGAGGCTGTGTTTGAATGTAGAGAAGCCATTCGAATTGATCAGCATTACCAAAGAGCTCATCAACGATTGGGAAACTTGTACTTTAGACTAGGAGACCCAGAAAAGGCATTGTATCATTATAAACAAGCAGGACCAGAGGCTGATCCTGATGAGATTGCTAAAGTGAAGATTCTTCAGGTTCATCTAAACAAGTGCACAGAGGCTCGCAGGGTGGGAGATTGCAACACACTGATCACTGAAACCAACAAGGTTATATCATCTGGTGCAGATTCTGCTCAACAGATATTTGCATTACAAGCAGAAGCACTCTTAAAGCTTCGTAGACATCAAGATGCAGAAAAAATAATGTCAAAGTGCCCGAAATTTGATGTTGATGAGTGTACTAGGTTCTTTGGACCTATTTGCAATGCAAATTTGTTGGTGACACGTGCCCAAGTCGATATAGCAGCGGGGAGATTTGAAGATGCTTTAGAAGCAGCTCAGAAAGCAGTTAGTTTGGATCCCAATAATAGGGAGGCCAATATGGTTATGAGAAAGGCTCGAGATGTCAGCGCTGCTCGATCAAAGGGAAACGAGCTTTTCAAGGCATCAAGGTTCTCTGAGGCCTGTGCCGCATATGGAGAGGGACTTGAACGTGATCCATATAACTCTGTTTTACTATGCAACAGTGCTGCATGCAGATCAAAACTAGGCCAATATGAGAAAGCTGTGGAAGATTGCACTCTTGCACTTAACTTGCGCCCATCTTATGCCAAGGCTAGGTTGAGAAGAGCTGATTGCAATGCCAAGTTGGAAAGGTGGGAAGCTTCCATACAAGACTATGAAATTTTGTTAAAAGAGACACCAGATGATGAACAAGTAAAACGGGCATTGCTGGAGGCCCAAGAAAAGCTAAAGAAGCAAAGAGGTGGATAA 1743 0.4274 MRDTSPESRGCGLLSSLLRRRGSSRSKTERYSGNDDAHNHGKQPSKTKDSKRPQSDVSDDARRSASSASSNSNTPQSQKHVVVSVNQNHQRKQQQHDEAAAASMAVCSSSRSSKVSPVQGYVNQGRKVPKDAVGISGELDSMLNDYQKPKGSNKLVRASSNVMIYGNLGNLGQGGGGTNYPSSNIPMDKVENGGGSNNNRNKKVTRNSKEESGSLCRAVSTRMDPEQLKIMGNEDYKNGNFAEALALYDAAIAIDPNKAAYRSNKSAALTALGRLLEAVFECREAIRIDQHYQRAHQRLGNLYFRLGDPEKALYHYKQAGPEADPDEIAKVKILQVHLNKCTEARRVGDCNTLITETNKVISSGADSAQQIFALQAEALLKLRRHQDAEKIMSKCPKFDVDECTRFFGPICNANLLVTRAQVDIAAGRFEDALEAAQKAVSLDPNNREANMVMRKARDVSAARSKGNELFKASRFSEACAAYGEGLERDPYNSVLLCNSAACRSKLGQYEKAVEDCTLALNLRPSYAKARLRRADCNAKLERWEASIQDYEILLKETPDDEQVKRALLEAQEKLKKQRGG* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1172 580 MobiDBLite consensus disorder prediction 22 59 - -
Ahy20g1172 580 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 578 IPR044534 -
Ahy20g1172 580 MobiDBLite consensus disorder prediction 105 120 - -
Ahy20g1172 580 Coils Coil 533 553 - -
Ahy20g1172 580 MobiDBLite consensus disorder prediction 1 120 - -
Ahy20g1172 580 MobiDBLite consensus disorder prediction 180 202 - -
Ahy20g1172 580 MobiDBLite consensus disorder prediction 180 217 - -
Ahy20g1172 580 SUPERFAMILY TPR-like 458 577 IPR011990 GO:0005515
Ahy20g1172 580 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Ahy20g1172 580 SUPERFAMILY TPR-like 225 449 IPR011990 GO:0005515
Ahy20g1172 580 Pfam Tetratricopeptide repeat 232 289 - -
Ahy20g1172 580 Pfam Tetratricopeptide repeat 505 560 - -
Ahy20g1172 580 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Ahy20g1172 580 SMART tpr_5 413 446 IPR019734 GO:0005515
Ahy20g1172 580 SMART tpr_5 459 492 IPR019734 GO:0005515
Ahy20g1172 580 SMART tpr_5 293 326 IPR019734 GO:0005515
Ahy20g1172 580 SMART tpr_5 527 560 IPR019734 GO:0005515
Ahy20g1172 580 SMART tpr_5 493 526 IPR019734 GO:0005515
Ahy20g1172 580 SMART tpr_5 225 258 IPR019734 GO:0005515
Ahy20g1172 580 SMART tpr_5 259 292 IPR019734 GO:0005515
Ahy20g1172 580 MobiDBLite consensus disorder prediction 60 90 - -
Ahy20g1172 580 Pfam Tetratricopeptide repeat 294 319 IPR013105 -
Ahy20g1172 580 Pfam Tetratricopeptide repeat 414 446 IPR013105 -
Ahy20g1172 580 Gene3D Tetratricopeptide repeat domain 223 579 IPR011990 GO:0005515
Ahy20g1172 580 PANTHER OS01G0616333 PROTEIN 6 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1172 Ahy-Chr20 20400141 20404783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1172 273 572 Glycosyltransferase AT3G04240 22.671 4.45e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1172 - - gmx:100811282 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1172 20 20400141 20404783 Ahy10g0864 10 12557100 12561836 hybridization