Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1092 ATGTCCTTCCTCTCTATCTGCCTTCTTATTTGTTTCTGTTTTCAGAGTGTATCATCTGAAAATGTATCCGGAAGTGACCTACAGCAAGCTAGCATCCCACCAAGAGGTTGGAATTCCTATGATTCTTTTTGTTGGACAGTTTCTGAACAGGAATTCTTACAAAATGCTGAAATAGTGTCTCGAACACTACATGATCATGGATATGAGTATGCTGTGGTGGATTACCTTTGGTATAGAAGGAAAGTCAATGGCGCTGGACATGATTCTCTTGGGTTTGATGTGATTGATGAATGGGGGAGAGTGATTCCTGACCCTGGAAGGTGGCCTTCTTCCCTAGGTGGAAAAGGGTTCATTGAAGTTGCTAATAAGGTACATAGCATGGGTTTGAAATTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCCGTCAATGCAAACACTGCTATCCTAGATACAGCAACGGGAGGTGCTTATCAAGAATCTGGTCGAGTTTGGGGTGCCAAAGACATAGCAATCCCAGCAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAAATACATCATTGGGAGCTGGGAAAGCTTTTTTGAGATCCCTTTATGAGCAATATGCTTCATGGGGTGTTGATTTTGTGAAACATGACTGTGTATTTGGTGATGACTTGGATTTAAGTGAAATAAGCTATGTATCAGAGGTTCTAAGGAAGCTTGATCGCTCCATTGTATATTCCTTGTCTCCTGGAACTAGTGTGACCCCAGCCATGGCCAAGGATGTCATTGGACTGGTCAACATGTATCGTATTACAGGAGATGACTGGGATACATGGTGGGATGTAAAATGTCACTTCAACGTAACAAGGGATTTTGCAACTGCTAATCTGATAGGAGCAACAGGCTTAAATGGGAAATCCTGGCCTGATTTGGACATGCTTCCATTTGGATGGTTAACAGATCCTGGTGTAAATGAAGGTCCACACAGGTATTGTAGACTCAATCTAGAAGAGCAAAAGACACAGATAACACTTTGGGCGATAGCAAAGTCTCCCCTAATGTATGGAGGGGATCTGCGAAAAATTGATCCTACAACATATGGCCTTATCACAAACCCTACTCTTCTGGAGATCAACTCTTTTAGCTCAAACAATATGGAGTTTCCTTATATCACAAGCTTGAGGAGTGAAGGTCAAGATCTTGGAGGGCAAATGAGAAGATATATCAAAGAAACAAAGACCTTATATACACATTCATTAGGTCTCACTAACTGCTCTGATCCGAAGGCAAGTGCTTGGACTAGTGAAACTGTTGACCAAGATGTTGAAAGGATCTGTTGGAAAGGGACTTTGAGAAACAAGCCTTTGGCAGCTTTCTGTGTAAACAAGAGAAAACTTCACTTCAAATTTATTGAAGAGAGTTTGTCCCAACTGAACCTTGGAAGGAAATATCATTTAGTTGCAACCAATAGAATAAAATTTTGCTTGGATGCTTCTCCTAGACGAAAGCTTACTTCTAACGAGTTCGTTAGACGCCCATTTTCTCCGTGCAAATGGGATGCATATCAGATGTGGGAACTGAACCCTAATGGGACGCTGGAAAATAGTTATTCTGGCCTATGTGCAACAATGGAGCCTGTCAAAGCTACTATTAACTCCGGTGGGCTTCGCTCTTGGATTGCAACCGGAAGAAATGGAGAAGTCTATGTTGCTTTCTTCAATCTAAATGAGCAGAAGACTGTGATATCTGCCCAGATATCAGACATTGCTAAAGTTCTTCCAGGCACAGACTTAAGTTCTTGTGAGGGCACTGAATTGTGGAGTGGAAGTGACGTGGTAATATCACAGGGTGCGTTATCAACGGCGGTTGAAGCGCATGGAAATGCGCTATTTGTACTAAGCTGCAGTCCCAAGAACAAAATAAAAATGGTTGTCACTGCTGATGCATAA 1947 0.4222 MSFLSICLLICFCFQSVSSENVSGSDLQQASIPPRGWNSYDSFCWTVSEQEFLQNAEIVSRTLHDHGYEYAVVDYLWYRRKVNGAGHDSLGFDVIDEWGRVIPDPGRWPSSLGGKGFIEVANKVHSMGLKFGIHVMRGISTQAVNANTAILDTATGGAYQESGRVWGAKDIAIPARACAWMPHGFMSVNTSLGAGKAFLRSLYEQYASWGVDFVKHDCVFGDDLDLSEISYVSEVLRKLDRSIVYSLSPGTSVTPAMAKDVIGLVNMYRITGDDWDTWWDVKCHFNVTRDFATANLIGATGLNGKSWPDLDMLPFGWLTDPGVNEGPHRYCRLNLEEQKTQITLWAIAKSPLMYGGDLRKIDPTTYGLITNPTLLEINSFSSNNMEFPYITSLRSEGQDLGGQMRRYIKETKTLYTHSLGLTNCSDPKASAWTSETVDQDVERICWKGTLRNKPLAAFCVNKRKLHFKFIEESLSQLNLGRKYHLVATNRIKFCLDASPRRKLTSNEFVRRPFSPCKWDAYQMWELNPNGTLENSYSGLCATMEPVKATINSGGLRSWIATGRNGEVYVAFFNLNEQKTVISAQISDIAKVLPGTDLSSCEGTELWSGSDVVISQGALSTAVEAHGNALFVLSCSPKNKIKMVVTADA* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1092 648 PRINTS Glycosyl hydrolase family 27 signature 121 142 IPR002241 GO:0004553|GO:0005975
Ahy20g1092 648 PRINTS Glycosyl hydrolase family 27 signature 336 357 IPR002241 GO:0004553|GO:0005975
Ahy20g1092 648 PRINTS Glycosyl hydrolase family 27 signature 27 46 IPR002241 GO:0004553|GO:0005975
Ahy20g1092 648 Gene3D Aldolase class I 10 380 IPR013785 -
Ahy20g1092 648 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 632 IPR002241 GO:0004553|GO:0005975
Ahy20g1092 648 Pfam Alpha galactosidase A 203 378 IPR002241 GO:0004553|GO:0005975
Ahy20g1092 648 SUPERFAMILY Ricin B-like lectins 492 555 IPR035992 -
Ahy20g1092 648 SUPERFAMILY (Trans)glycosidases 31 378 IPR017853 -
Ahy20g1092 648 CDD GH27 33 378 IPR002241 GO:0004553|GO:0005975
Ahy20g1092 648 Gene3D - 547 635 IPR013780 -
Ahy20g1092 648 SUPERFAMILY Glycosyl hydrolase domain 549 633 - -
Ahy20g1092 648 Pfam Alpha galactosidase C-terminal beta sandwich domain 553 632 IPR041233 -
Ahy20g1092 648 PANTHER ALPHA-GALACTOSIDASE 3 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1092 Ahy-Chr20 17370791 17376826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1092 5 464 Glycoside Hydrolase AT3G26380 65.727 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1092 - - gmx:100777954 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1092 20 17370791 17376826 Ahy10g0798 10 10447575 10453519 hybridization
Ahy13g4070 13 140163848 140169588 Ahy20g1092 20 17370791 17376826 PCT
Ahy3g3791 3 137316123 137321585 Ahy20g1092 20 17370791 17376826 PCT