Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1000 ATGGGTTCTGAGAAGGAAATAAGTGGTGGCGGTTTGGCATCTGCAGCTATAACAACAACAACAACAACAGGTTCAAAGCAAAAGAACCTTGATGATTGGCTTCCCATAACTGCTTCAAGAAATGCGAAATGGTGGTATTCTGCTTTTCACAACCTCACGGCCATGGTTGGTGCTGGAATTCTCAGCCTTCCTTATGCCATGTCACATATGGGATGGGGTGCTGGTGTTACAGTGATGATCCTGTCATGGATAATCACACTATACACGCTATGGCAAATGGTTGAGATGCACGAAATGGTACCTGGGGGAAAGAGAAACGACAGGTATCATCAGTTGGGACAAGAAGCTTTCGGAGAAAAGCTTGGTCTGTGGAATGTGGTTCCTCAACAACTGCTTGTTGAAGTTGGTACATGCATTGTATACATGGTCACTGGAGGCAAATCTTTGAAAAAAGTTCATGAAACCTTTTGTCCTGATTGTAAACAAATCAGAACCACTTATTGGATCATGGTGTTTGCTTCTGTAAACTTTGTGCTTGCACAAATTCCTAACTTTAACTCTATTTCCGCTATCTCTGCTGGTGCAGCCGTCATGTCTCTCAGTTACTCAACAATCGCTTGGGCTGCGTCTATCAAGAAAGGGATTTCAAAGGACATAGACTATACTGTAAAAATGAATAGCACGAGCGATGGTGTGTTCAATTTCTTCTCTGCATTGGGAGATGTGGCATTTGCATACGCAGGCCACAATGTGGTTCTTGAAATCCAAGCTACAATGCCTTCAACTGCGGAGAAACCTTCTAAGATACCAATGTGGAGAGGGTGTGTTTTGGCATACATTGGAGTTGCATTATGCTACTTCCCTGTTGCCTTTATTGGGTACTACATGTTTGGAAATTCTGTGGATGATAACATCCTCATCACACTCCAACGCCCTGCTTGGCTTATTGGCATTGCTAACTTGTTTGTTGTCATCCATGTTGTTGGAGGCTACCAGGTATTTGCAATGCCAGTGTTTGATATGATTGAAACCTTCTTGGTTACACGCTTGAATTTCTCACCTTCTACTACCCTGCGATTCACAACTCGCTTTCTATATGTTGCAATTACAATGTTCATAGGAATTTGTGTCCCATTTTTTGGGTCTCTTCTTGGATTTCTTGGTGGATTCGCATTTGCTCCCACCTCTTATTATCTACCATGCATCATATGGCTTAAGCTCAAGAAACCTAAAAAATATGGCTTGTCTTGGACGATTAATTGGATATGTATTATTATTGGAATATTGATAATGACACTATCTCCTATTGGTGCATTGAGGAATATCATTATGTCAGCCAAGGATTACAAATTTTTCTCATGA 1362 0.4141 MGSEKEISGGGLASAAITTTTTTGSKQKNLDDWLPITASRNAKWWYSAFHNLTAMVGAGILSLPYAMSHMGWGAGVTVMILSWIITLYTLWQMVEMHEMVPGGKRNDRYHQLGQEAFGEKLGLWNVVPQQLLVEVGTCIVYMVTGGKSLKKVHETFCPDCKQIRTTYWIMVFASVNFVLAQIPNFNSISAISAGAAVMSLSYSTIAWAASIKKGISKDIDYTVKMNSTSDGVFNFFSALGDVAFAYAGHNVVLEIQATMPSTAEKPSKIPMWRGCVLAYIGVALCYFPVAFIGYYMFGNSVDDNILITLQRPAWLIGIANLFVVIHVVGGYQVFAMPVFDMIETFLVTRLNFSPSTTLRFTTRFLYVAITMFIGICVPFFGSLLGFLGGFAFAPTSYYLPCIIWLKLKKPKKYGLSWTINWICIIIGILIMTLSPIGALRNIIMSAKDYKFFS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1000 453 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 21 448 - -
Ahy20g1000 453 PANTHER OS05G0424000 PROTEIN-RELATED 21 448 - -
Ahy20g1000 453 Gene3D Amino acid/polyamine transporter I 37 447 - -
Ahy20g1000 453 Pfam Transmembrane amino acid transporter protein 41 438 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1000 Ahy-Chr20 14603795 14611794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1000 12 453 Organic Solute Cotransporters AT1G24400 72.624 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1000 - - adu:107468917 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1000 20 14603795 14611794 Ahy20g1000 20 14603795 14611794 ECH
Ahy20g1000 20 14603795 14611794 Ahy10g0719 10 8143720 8151693 hybridization
Ahy20g1000 20 14603795 14611794 Ahy3g4171 3 141665791 141669169 PCT
Ahy3g4171 3 141665791 141669169 Ahy20g1000 20 14603795 14611794 PCT