Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0110 ATGAGTTATTATCTTATGCTAACCCTAATATCATCATTAGCTTTCACATTGCTAATTGGAACCACCATAGCTGAACAATGTGGAAAACAAGCAAATGGATCATTGTGCCCTAACAACCTATGTTGTAGCAAATTTGGTTATTGTGGTAACACAAATGACTATTGCGGTGACGGTTGCCAAAGCCAATGCAAAGGTTCAACACCAAAAACACCACCTAGTTCCGGCGGTGGTTCCGGTGGTGGTGATGTTGGTAGGATCATAACTTCTTCTATCTTTGATCAAATGCTTAAGTACCGGAACGATCCGCGGTGTAAGGGAAACGGATTCTATTCCTATAATGCTTTCATCGCCGCCGCTCGCTCTTTCCGCGGCTTTGGTACCACCGGTGATGATGCCACCAAGAAGAAGGAGCTTGCTGCCTTTTTGGCTCAAACTTCCCATGAAACCACAGGAGGATGGGCAAGTGCACCAGATGGACCATATGCATGGGGATATTGCTTTATCAATGAAAATACCCAGGCAGATTATTGTACCCCTTCCCAACAATGGCCATGTGCTTCTGGCAAAAAATACTATGGCAGAGGACCAATTCAACTTACTCACAACTATAATTATGGGCCAGCGGGTAAGGCTATAGGACAAGATCTTCTAAACAACCCTGATTTAGTGGCTAGAGATGCAACTATTTCATTCAAGACAGCCATATGGTTTTGGATGACAGCACAAGGAAACAAGCCATCAAGCCATGATGTCATCACCGGAAGATGGACACCATCGGCCGCGGACAAGGCGGCCGGCCGAGTCTCCGGATTTGGAGTGATCACTAACATTATTAATGGCGGAATTGAATGTGGGCACGGATCGGATTCCCGGGTCCAAGATCGGATCGGGTTTTATAAAAGGTATTGCCAAATATTGGGAGTTAGTCCTGGAGATAACTTGGATTGCAACAACCAAAAGCCTTTTGCTTAG 972 0.4527 MSYYLMLTLISSLAFTLLIGTTIAEQCGKQANGSLCPNNLCCSKFGYCGNTNDYCGDGCQSQCKGSTPKTPPSSGGGSGGGDVGRIITSSIFDQMLKYRNDPRCKGNGFYSYNAFIAAARSFRGFGTTGDDATKKKELAAFLAQTSHETTGGWASAPDGPYAWGYCFINENTQADYCTPSQQWPCASGKKYYGRGPIQLTHNYNYGPAGKAIGQDLLNNPDLVARDATISFKTAIWFWMTAQGNKPSSHDVITGRWTPSAADKAAGRVSGFGVITNIINGGIECGHGSDSRVQDRIGFYKRYCQILGVSPGDNLDCNNQKPFA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0110 323 PANTHER CHITINASE-RELATED 9 323 - -
Ahy20g0110 323 SUPERFAMILY Lysozyme-like 82 322 IPR023346 -
Ahy20g0110 323 PANTHER CHITINASE (CLASS IB) / HEVEIN 9 323 - -
Ahy20g0110 323 CDD ChtBD1_GH19_hevein 25 64 - -
Ahy20g0110 323 ProSitePatterns Chitinases family 19 signature 1. 104 126 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ahy20g0110 323 Gene3D Endochitinase, domain 2 169 225 - -
Ahy20g0110 323 Gene3D - 91 322 - -
Ahy20g0110 323 SMART ChitinBD_3 26 63 IPR001002 GO:0008061
Ahy20g0110 323 Pfam Chitinase class I 86 316 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ahy20g0110 323 ProSiteProfiles Chitin-binding type-1 domain profile. 24 65 IPR001002 GO:0008061
Ahy20g0110 323 CDD chitinase_GH19 87 316 - -
Ahy20g0110 323 PRINTS Chitin-binding domain signature 34 42 IPR001002 GO:0008061
Ahy20g0110 323 PRINTS Chitin-binding domain signature 49 56 IPR001002 GO:0008061
Ahy20g0110 323 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Ahy20g0110 323 ProSitePatterns Chitinases family 19 signature 2. 229 239 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ahy20g0110 323 Pfam Chitin recognition protein 26 63 IPR001002 GO:0008061
Ahy20g0110 323 PIRSF Endochitinase 2 323 IPR016283 GO:0004568|GO:0005975
Ahy20g0110 323 SUPERFAMILY Plant lectins/antimicrobial peptides 26 69 IPR036861 GO:0008061
Ahy20g0110 323 ProSitePatterns Chitin recognition or binding domain signature. 36 55 IPR018371 GO:0008061
Ahy20g0110 323 Gene3D - 24 66 IPR036861 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0110 Ahy-Chr20 889681 893265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0110 24 323 Glycoside Hydrolase AT3G12500 67.550 9.03e-147 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0110 K20547 - gmx:547572 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0110 20 889681 893265 Ahy20g0110 20 889681 893265 ECH