Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2892 ATGGCAATGCAGGAAGCAAGCCCTGCCACCGCTCCTAGTGCCCAAGTTGTCGGCAATGCATTTGTGGAGCAATACTATCACATTCTACACCAATCCCCAAATTTGGTGCACAGATTTTACCAGGACTCAAGTTTCTTAAGCCGTTCAGACAACGATGGCCAGATGACAACTGTGACTACTATGCAAGCAATCAATGAAAAGATACTTTCCTTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCTGATGCTCAGGAGTCATATGAGAAAGGTGTGATAGTTTTAGTAACTGGATGCTTAACCGGGAAGGATAATGTGAAAAGGAAGTTCTCACAGACATTCTTTCTGGCACCACAAGATAAGGGGTATTATGTCTTAAATGACGTCTTTAGGTATGTTGAGGAGAATGACACACTGCAGTCATCAAATCCCGACTCCACTGTCAATGAAAAAGCTGAGGCAGTGGCCATGCCGGAAGCAGATAATATACATGCTCCAGAACATCTTGTGACCAACCCTGCAATAACAGCAGAGAGTGAAAACCTTATTAATGGAGCTGAAGGTTATAATCCAGAGGACAATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCTGAACCCTCTGCAGATTTAAGTCAGAATGTTGCGATTCATGATTCAACTTCTGCAGTCCAGGATGATGCACCAAAGAAGTCATATTCATATGCATCAATTGTAATGAAAAGTAACACAGCATCTGGTCCTGTATATGTTCCCAGCCGAACTGTAAGAGCAGTACCTGCTAAATCCAGTGAACAATGGCCTACTACTACCAAACCAACTCCAGTACCAGAGGCATTAGCTCCTAGTAATGACAGTGCTCCTGGGAGTAGTGATGTTCATGAGGAAGCTGAAGGTCATTCCATATACATACGGAATTTGCCATTTAATGCAACTGTTGAACAACTTGAGGAGGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGAATCCAAGTTAGAAGTAGTAAGCATGGCTTCTGTTTCGGCTTTGTTGAATTTGAGGAAATGACTTCCATGAATAGCGCACTTGAGGCTTCACCTATCACCGTTAGTGATCGACAAGCTGTTATTGAGGAGAAGAGAACTACTACAAGAGTTAGTGGTAGTGGAAGAGGAAGGTTTCCCTCCGGAAGAGGTGGGTTCAGAAGTGACAGTTTCAGGGGGCGTGCGAAATTTGGTGGCGGAAGAGGTTATGGCAGAAATGAGTTCAGAAACCAAGGAGAGTTCACAACGCGACCTAAGGGTCCAGCTGGACAAAAGGGAGATGGTTCTCAACGGCCCAGTCAAAATGGAAGTGGGCGGGGTGGACGGCAAGGTGTTGGCAACCGAAGTACTGCACCATCAACTTGA 1398 0.4406 MAMQEASPATAPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRSDNDGQMTTVTTMQAINEKILSLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVKRKFSQTFFLAPQDKGYYVLNDVFRYVEENDTLQSSNPDSTVNEKAEAVAMPEADNIHAPEHLVTNPAITAESENLINGAEGYNPEDNEEEGSVIDEEVAEPSADLSQNVAIHDSTSAVQDDAPKKSYSYASIVMKSNTASGPVYVPSRTVRAVPAKSSEQWPTTTKPTPVPEALAPSNDSAPGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEEMTSMNSALEASPITVSDRQAVIEEKRTTTRVSGSGRGRFPSGRGGFRSDSFRGRAKFGGGRGYGRNEFRNQGEFTTRPKGPAGQKGDGSQRPSQNGSGRGGRQGVGNRSTAPST* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2892 465 SMART rrm1_1 303 374 IPR000504 GO:0003723
Ahy1g2892 465 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 457 - -
Ahy1g2892 465 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 457 IPR039539 -
Ahy1g2892 465 CDD RRM_SF 304 361 - -
Ahy1g2892 465 MobiDBLite consensus disorder prediction 261 279 - -
Ahy1g2892 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 378 IPR000504 GO:0003723
Ahy1g2892 465 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Ahy1g2892 465 MobiDBLite consensus disorder prediction 376 465 - -
Ahy1g2892 465 SUPERFAMILY RNA-binding domain, RBD 298 405 IPR035979 GO:0003676
Ahy1g2892 465 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Ahy1g2892 465 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Ahy1g2892 465 MobiDBLite consensus disorder prediction 260 299 - -
Ahy1g2892 465 Gene3D - 294 383 IPR012677 -
Ahy1g2892 465 MobiDBLite consensus disorder prediction 438 465 - -
Ahy1g2892 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Ahy1g2892 465 CDD NTF2 13 135 IPR018222 -
Ahy1g2892 465 Gene3D - 7 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2892 Ahy-Chr1 109824728 109829729 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2892 K24983 - gmx:100801253 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2026 11 128970728 128975486 Ahy1g2892 1 109824728 109829729 hybridization