Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2238 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGCGTCGATTTGGGCGGTCGCAGCTCCAAGGAAAGGGACAGGAAGAACCTTCTAGAACAGACTCGCGTCGAACGCAACCGCCGCCTCTGGCACCGTCAACAGAACTCTGCTGCGCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAAGATGTCAGACTTGAAAAGTCTAGGTTGCGAGAGCAGTTCTACAAGACCTATGGCAAGTACTGCCAGAATGTAGACAGGAATTCTTTCTGTGTCAACTCTGATTTCCTTCGCCAGTTCCTTTATTTCTTTAAGGCAGACAATATAGATGATTTTTTAGTTCTCGTGCAGATATGCCGATTGCTTCAGCAGTTCGTTCACGAAGATGGGGATGTTGTCAAACATTTTGCTGGTGTGGATTACTCATCCACGGGTGGTTTGGTGAATTACCGAGTGAAGCAACTTGTATATTCTTGTATTTGTGCACTACATCAGAATAGAAATCAGTTGAAGGATCAGCTTTTATTGAGTCCTGAGGAATTGGATGCGTCGGCTGTGCCTTTATTGGAAGTTATAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGCAAGATAGTAGGATATCTCTTTCAAAACAATGCATTAGGGCTACTCAGAGAGATTATCCTTACAGGAAAGGATAATGCAGAAAATTATTTTCCCATTGGAAAAGGATCATCGTTGGAGCGTCTTCTTATGGTTGTAATTTGTCACATTGGTCAGAAACCATGTGTTTGTTCAGATATCAATCCAAGATATAGCTTTGCATCACAGATCATTACTATTCCATTCGTGTGGCATCTCTTCCCAAACTTAAGACAGGTTTTTGCAGCAGAGGGCATGAGTCAACATTATATTCATCATATGGCAACATTTGGGCAAAATCTAATCAATTCGCTACCCAAAGATATGTCAAATGAAGTTCCTAGCTATGCATGTATGCTTGGAAATATATTAGAAACATCTGGAGTTGCTTTATCTCAGCCTGCGTGTTCATTTGATATGGCCGTAGATCTTGCTGCTGTTACTACCTTTCTAATGGAGGCACTTCCTTCTGTGAGAACATCTGATAATAGAGAAAGTTCAATGATTCTTGATGATGATATGATTGAAGATGAAGCAGCTGCGGAAGTAGCTTTAGATAAGAAACTGGAGCAGCAGATTTATAATGCCATAAACCCTCGCTTCCTTCTACATCTGACAAATATACTATTTAGAGAGATTTCATCTGTCAATGCTTTAGAGTATGGACCAGATGATAGAGAGGTGGCAGCTGTTGGTGCAGCTTGTGGGTTTTTGTATGTTACCTTCAACAAACTTCCCATGGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCTATGCTTTGGAATTTTATGAAGCGGTGCCATGAAAATAAGAAATGGTCATCTTTGTCTGAGTGGTTATCATACCTCTCAGGTGATGCACCTGGTTGGCTGTTACCACTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATAGTCGATAATGAGGAATTTTATGAGCAGGAGAGGCCACTGTCACTGAAGGATATCAGAAGCCTTATCATTATATTGAGACAGGCTTTATGGCAGCTGCTGTGGGTAAATCATACCACAAATCCTAATTTGCTGAAATCTGCTTCAGCCAGTTCGGCTAGTAAGAGGCAGTCTGTTGAAGCTATTCAACAGAGGGTTAGCATTGTGGTTTCTGAGCTTCTTTCACAGCTGCAAGATTGGAACAACAGGCGGCAGTTTACATCCCCCAGTGATTTTCATGCAGATGGGGTGAATGACTTTTTTATCTCCCAGGCTGTAACAGAAAACACACGAGCAAATGAAATTTTGAAGCAGGCCCCTTTCTTGATACCATTTACGAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCAGTTAGGCAAAGACATGGTTCTCAGGCTGGATTTACTCGAAACCGGTTCAGAATAAAACGAGATCGCATTTTAGAAGATGCTTATAATCAAATGAGTCAGTTGTCCGAAGATAATCTTCGAGGACTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCGGGAATCGATGGTGGTGGAATATTCAAAGATTTTATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTGTTCAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATTTCCAATTTTTCCACTTTCTTGGCACTCTTCTTGCAAAGGCCATGTTTGAAGGAATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAACTTAAACAAAAGTACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGCCATCTTATTTTTCTCAAGCATTATGATGGTGACATATCAGACTTGGAATTATACTTTGTGATAGTAAACAATGAATATGGTGAGCAAACAGAGGAGGAACTGCTCCCGGGGGGAAGGAATCTACGTGTTACTAATGACAATGTCATTACTTTTATTCATCTTGTAGCAAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCTCATTTCTTGAGGGGATTTCAGCAACTTATTCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTTTGATATCAGGTTCACTGGAGAGCTTGGATGTCGATGATCTGCGGCAGCATACCAACTATGCAGGAGGCTATCACAGTGATCATTATGTGATTGAGATGTTTTGGGAGATTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTCTGAAGTTTGTGACAGGTTGCTCTCGTGGACCATTGCTGGGTTTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCTGCTGGTACTGCATCGGAGGAAGCTCTTGACCGATTACCAACGTCAGCTACTTGTATGAATCTGCTAAAGCTTCCACCTTATCAAAGTAAGGAGCAATTGGAAACCAAATTGCTTTATGCCATAAATGCCGATGCTGGTTTTGATTTAAGTTAA 3099 0.4111 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWHRQQNSAALKIQKCFRGRKDVRLEKSRLREQFYKTYGKYCQNVDRNSFCVNSDFLRQFLYFFKADNIDDFLVLVQICRLLQQFVHEDGDVVKHFAGVDYSSTGGLVNYRVKQLVYSCICALHQNRNQLKDQLLLSPEELDASAVPLLEVIVLLIDPKLPWSCKIVGYLFQNNALGLLREIILTGKDNAENYFPIGKGSSLERLLMVVICHIGQKPCVCSDINPRYSFASQIITIPFVWHLFPNLRQVFAAEGMSQHYIHHMATFGQNLINSLPKDMSNEVPSYACMLGNILETSGVALSQPACSFDMAVDLAAVTTFLMEALPSVRTSDNRESSMILDDDMIEDEAAAEVALDKKLEQQIYNAINPRFLLHLTNILFREISSVNALEYGPDDREVAAVGAACGFLYVTFNKLPMERIMTVLAYRTELVPMLWNFMKRCHENKKWSSLSEWLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQERPLSLKDIRSLIIILRQALWQLLWVNHTTNPNLLKSASASSASKRQSVEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVTENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGSQAGFTRNRFRIKRDRILEDAYNQMSQLSEDNLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYDGDISDLELYFVIVNNEYGEQTEEELLPGGRNLRVTNDNVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLESLDVDDLRQHTNYAGGYHSDHYVIEMFWEILKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAAGTASEEALDRLPTSATCMNLLKLPPYQSKEQLETKLLYAINADAGFDLS* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2238 1032 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1032 IPR044611 GO:0000209|GO:0061630
Ahy1g2238 1032 PANTHER BNAC01G43970D PROTEIN 1 1032 - -
Ahy1g2238 1032 SMART hect_3 689 1032 IPR000569 GO:0004842
Ahy1g2238 1032 Gene3D Hect, E3 ligase catalytic domain 914 1031 - -
Ahy1g2238 1032 ProSiteProfiles HECT domain profile. 691 1032 IPR000569 GO:0004842
Ahy1g2238 1032 CDD HECTc 670 1030 IPR000569 GO:0004842
Ahy1g2238 1032 Gene3D Hect, E3 ligase catalytic domain 796 875 - -
Ahy1g2238 1032 Pfam HECT-domain (ubiquitin-transferase) 727 1032 IPR000569 GO:0004842
Ahy1g2238 1032 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Ahy1g2238 1032 MobiDBLite consensus disorder prediction 1 22 - -
Ahy1g2238 1032 Gene3D Hect, E3 ligase catalytic domains 672 910 - -
Ahy1g2238 1032 SUPERFAMILY Hect, E3 ligase catalytic domain 663 1024 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2238 Ahy-Chr1 100169868 100179859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2238 K10589 - gmx:100789933 1776.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2714 11 143758260 143768268 Ahy1g2238 1 100169868 100179859 hybridization
Ahy1g2238 1 100169868 100179859 Ahy14g0876 14 13608020 13623661 PCT
Ahy1g2238 1 100169868 100179859 Ahy4g0787 4 11866786 11887678 PCT
Ahy14g0876 14 13608020 13623661 Ahy1g2238 1 100169868 100179859 PCT
Ahy4g0787 4 11866786 11887678 Ahy1g2238 1 100169868 100179859 PCT