Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1200 ATGGCAGTTCAAGCTCAGTATCCCTCAAATATTCTCTTTCTAAACAGAAACAACGGGCAAGAAGGACAGCAGGCAGCAGGACTAGTCCTTGATCAACCAATCTTATACAACAACAATAATGGAAGTGCTAATTCTCGGAAGAGAACAAGAGAGGCCACAGTTCACAGCAACAGCAATGTTGTCATGAACAATAATAATAATCATAATCCATTGATACCTTTCGAATCCCAACCTCCACAACTCATACACCTTTCTCAGCTGCACAATAATGTGGTCTCAACAGGCCTACGCTTATCCAACTCTACCATCGACCAACAACAACTTCTTCATGGATCTCAATCTTCATCTTCATCTTCTCTCTTATCTCTGTTCTCACAAGGCTTTGCTTCCCAAATCAAACAACAAAGGGACGAAATTGAACAATTCCTCCAAGCTCAGGGGGAGGAGTTGCGGCGGGCATTGGCAGAGAAAAGGCAGAGGCATTACCGCGCGCTGCTGACCGCCGCGGAGGAGGTGGTGGCACGGCGGCTCAGGGAGAAGGAGGCGGAGGTTGAGAAGGCCACACGGCGGAACGCCGAGCTGGAGGCACGTGCCGCGCAGCTCGCAGCGGAGGCGCAGGTGTGGATGGCGAAGGCGAGGACCCAGGAAGCGGCGGCGGCATCGTTACAGGCGCAGCTCCAGCAGACCATGATGGCCTCTGCTGGCGCCGCCACACACGGCGGAGATGACGGTGGCGCCGGATTGTCATGCGCGGTTGAGGGACAGGCGGAGGACGCAGAATCAGCGTATGTGGACCCGGACAGGGTGGTGATGGTTTCGGCAGCGGCGGCGCGTCCAAAGTGCCGGGGATGCGGGCGGCGCGTGGCTTCAGTTGTGGTTCTGCCGTGTCGGCACTTATGCATCTGTACGGAATGCGAGGCGCACTTCCGCGCGTGCCCCGTTTGCCTTACACTCAAGAATTCAACCGTTGAGGTCTTTCTCTGA 984 0.5498 MAVQAQYPSNILFLNRNNGQEGQQAAGLVLDQPILYNNNNGSANSRKRTREATVHSNSNVVMNNNNNHNPLIPFESQPPQLIHLSQLHNNVVSTGLRLSNSTIDQQQLLHGSQSSSSSSLLSLFSQGFASQIKQQRDEIEQFLQAQGEELRRALAEKRQRHYRALLTAAEEVVARRLREKEAEVEKATRRNAELEARAAQLAAEAQVWMAKARTQEAAAASLQAQLQQTMMASAGAATHGGDDGGAGLSCAVEGQAEDAESAYVDPDRVVMVSAAAARPKCRGCGRRVASVVVLPCRHLCICTECEAHFRACPVCLTLKNSTVEVFL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1200 327 PIRSF SBP1_RNase_bind 1 327 IPR017066 -
Ahy1g1200 327 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE ISOFORM X1 31 327 - -
Ahy1g1200 327 Coils Coil 170 211 - -
Ahy1g1200 327 Coils Coil 140 160 - -
Ahy1g1200 327 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 31 327 IPR017066 -
Ahy1g1200 327 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 24 IPR017066 -
Ahy1g1200 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 327 IPR013083 -
Ahy1g1200 327 Pfam Zinc finger, C3HC4 type (RING finger) 280 316 - -
Ahy1g1200 327 ProSiteProfiles Zinc finger RING-type profile. 281 315 IPR001841 -
Ahy1g1200 327 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE ISOFORM X1 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1200 Ahy-Chr1 31954072 31956030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1200 281 317 Miscellaneous Gene Families AT2G21380 37.838 5.91e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1200 K19042 - gmx:100788924 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1205 11 37827114 37829028 Ahy1g1200 1 31954072 31956030 hybridization
Ahy5g0454 5 5348502 5350026 Ahy1g1200 1 31954072 31956030 PCT
Ahy1g1200 1 31954072 31956030 Ahy5g0454 5 5348502 5350026 PCT