Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3546 ATGGGAAAGCAAAAGCAGCAAGTCATTTCACGTTTTTTCGCTCCCAAACCTAAAGCCTCTCCATCAACAACTGATCCAACACATTCTTCACCTCCTCCTTCTCCTCTTCCTTCCTCTTCTCGCCCTAATCCTCCAACCCCCAAAATCTCCGCCACCGTCACTTTCTCACCATCCAAACGGCTTCTTACTTCTCAAATCACTTCCCCCAACAAGCCACCAAAGCTCCCCAAACTCTCCCCCCACACTCACAACCCTCTTCCCCACCCCACCACCCATCAGCGCTTCCTCCAGAAACTTCTAGAACCTTCTGAGCCCGAGCCACCTTCCCATTCTTCTGCCAAACCCTTAAAGTACACTCCTTTGGAGGAGCAAGTGGCCGAGCTCAAAGGAAAGTACCCTGATGTTCTTTTGATGATCGAGGTTGGATACAGGTTCCGTTTTTTCGGCCAAGATGCTGAAAATGCTGCCAGGGTATTGGGTATATATGCGCATATGGATCGTAACTTTTTAACTGCTAGCATACCAACTTTTCGATTGAATGTCCATGTGAGGAGGCTTGTGAGTGCTGGCTATAAGGTTGGTGTGGTTAGGCAGACTGAGACAGCGGCTATTAAGGCTCATGGTTCAAACCGGCTAGGCCCATTTTGCAGGGGATTATCAGCATTGTACACGAAGGCCACACTGGAGGCAGCACCGGATTTGGGGGGAGGGGAAGAGGGGTGTGGGGCAGAGAGCAATTACTTGATGTGTGTGGTGGAGAAGAGCATTTTGGGAGAGAGGTCTGCGTGTGGGGTGGAGGGTAATTTTGATGTGAGGATTGGATTTGTTGCAGTGGAGATATCAACAGGGGATGTTATTTATGGGGAATTCGATGACAATTTCTTGAGGAGTGCACTTGAGGCTGTGATGTTGAACTTATCTCCCGCTGAGTTGCTTCTTGGGGACCCTCTTTCCAAACAAACGGAGAAGTTATTGCTGGCTTTTGCTGGTCCTGCTTCAAACGTTCGTGTGGAGCGAACCTCTCGAGATTGCTTCGCTGATGGAGGTGCTCTTGCAGAAGTCTTGACCTTGTATGAGAACATGGGTATAGGATGTTCATCAGATTCAATGCAAAACAAAGATTTGACCGAGCACACTAATCAGCCATTAGTTAAGATTTTAAAAAATAATAGTGATGGATCTGAGAACGGGTCCTTGCTGCAAATTATGAATCGCACCCTTACTATATTCGGTTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTATGCGATCAGACCATGATTTCTGCTCGTCTTCATGCTGTATCTGAAATTGCAGAGTCCATGAGCTCTTGTAGCATGAAGAGCCTAGAGTATGACGAAGACTCTGATGTAACAATTGTGCATCCCGAGTTAGCTTACATAGTTTCTTTGGTTTTGACGAATCTGAGCCGAGCACCTGATTTACAACGCGGGGTTACAAGAATATTCCATTGCACTGCTAAGCCAGTTGAGTTTGTTGCAGTTATTCAAGCTATTTTGTCAGCTGGAAAACAGCTTCAGCAACTTAACATATGCGAGGAGGAAAACAATAATTTGCATTCTAATCTGTTGAGAAGACTGATTCTGACTGCCTCCTCTGACAGTGTTATTGGCAATGCTACAAAAATGTTGTCTTCTTTAAACAAAGAATCTGCTGATCAAGGCGATCTAACAAATTTGATCATTGCATCTGAGGCACAATTTCCAGAGGTTACTAGAGCTCGGAAAGCTTTTCAAATGGAAGAGGAACAATTAAATTCATTGATCGGCTTGTATCGCAAGCGCCTTGGAATGCGGAAATTGGAATTCATGAGTGTTTCTGGAATTACTCATTTGATAGAGTTGGAGACTGATGTTAAGGTTCCTTTAAACTGGGTTAAGGTTAATAGTACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTGGTGACAGCATTGGACAAGGTATCTTTAGCAAAAGAAGAGCTTACTATTGCCTGCCGAACTGCTTGGGATAGCTTTCTGAGGGATTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCTCTGGCGGCTTTAGACTGCCTGCATTCCCTTGCCATTCTTTCAAGAAATAAGGGGTATGTTCGGCCAGTGTTTGTAGATGATTGTGAGCCTGTTCAGATACAAATTTGTGCTGGTCAGCATCCGGTTTTGCAGACTACCTTACAAGACAACTTTGTCCCAAATGATACAAACTTGCATGCTGACAGAGAGTACTGCCAGATTGTCACTGGACCCAATATGGGGGGGAAAAGTTGCTATATTCGCCAGGTGGCATTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGACAGGATCTACACTCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTGTCTGAGACTTCAAATATTCTTCATAACTGCACAGAAAATTCACTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGACGGTATGGCCATTGCTTATGCGACATTGCACTATCTTCTGAAGCAAAAGCGAAGCATCGTCCTCTTTGTCACTCATTATCCGAAGATTGCAGACCTCACAACCGAATTCCCTGGCTCTGTGGGAGCATATCATGTGTCACATCTAACCTCACATCATGATACAAGTAAAAACAAAAACTCTTGTCTTGATAATATAACTTATCTATACAAGCTCGTACCTGGTGTTTCAGAGAGAAGCTTCGGATTTAAGGTGGCTCAGCTAGCACAGTTACCACCACATTGCATTACTCGTGGCATTTTCATGGCTTCCAAATTGGAAGAGCTAGTGAACAATAGAATACATAGTAGATCGGTGAAGGAGCTGTTGTTGGATGCAATAGTGATTGGTCAAGAACAGGAATCACATCAAGAGTTTGGTAGTGCTTACAAGGAACTCTATTCAAACTTAAAAGCTGCAATTCTAGATGATGACCATGCAAAAAGCTTTCAGCTTCTGGATCATAGCAGAAAAATTGCAAAGAAATTAATTGGCAGACACTAA 3093 0.4429 MGKQKQQVISRFFAPKPKASPSTTDPTHSSPPPSPLPSSSRPNPPTPKISATVTFSPSKRLLTSQITSPNKPPKLPKLSPHTHNPLPHPTTHQRFLQKLLEPSEPEPPSHSSAKPLKYTPLEEQVAELKGKYPDVLLMIEVGYRFRFFGQDAENAARVLGIYAHMDRNFLTASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRLGPFCRGLSALYTKATLEAAPDLGGGEEGCGAESNYLMCVVEKSILGERSACGVEGNFDVRIGFVAVEISTGDVIYGEFDDNFLRSALEAVMLNLSPAELLLGDPLSKQTEKLLLAFAGPASNVRVERTSRDCFADGGALAEVLTLYENMGIGCSSDSMQNKDLTEHTNQPLVKILKNNSDGSENGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTMISARLHAVSEIAESMSSCSMKSLEYDEDSDVTIVHPELAYIVSLVLTNLSRAPDLQRGVTRIFHCTAKPVEFVAVIQAILSAGKQLQQLNICEEENNNLHSNLLRRLILTASSDSVIGNATKMLSSLNKESADQGDLTNLIIASEAQFPEVTRARKAFQMEEEQLNSLIGLYRKRLGMRKLEFMSVSGITHLIELETDVKVPLNWVKVNSTKKTIRYHPPEVVTALDKVSLAKEELTIACRTAWDSFLRDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVRPVFVDDCEPVQIQICAGQHPVLQTTLQDNFVPNDTNLHADREYCQIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSNILHNCTENSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKRSIVLFVTHYPKIADLTTEFPGSVGAYHVSHLTSHHDTSKNKNSCLDNITYLYKLVPGVSERSFGFKVAQLAQLPPHCITRGIFMASKLEELVNNRIHSRSVKELLLDAIVIGQEQESHQEFGSAYKELYSNLKAAILDDDHAKSFQLLDHSRKIAKKLIGRH* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3546 1030 Gene3D MutS, connector domain 242 446 IPR036678 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 PIRSF Msh6 107 383 IPR017261 GO:0006298|GO:0030983
Ahy19g3546 1030 PIRSF Msh6 381 1007 IPR017261 GO:0006298|GO:0030983
Ahy19g3546 1030 PIRSF Msh6 2 103 IPR017261 GO:0006298|GO:0030983
Ahy19g3546 1030 Pfam MutS domain II 246 322 IPR007860 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 SUPERFAMILY DNA repair protein MutS, domain II 244 325 IPR036678 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 Pfam MutS domain I 119 229 IPR007695 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 SMART mutATP5 755 954 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 MobiDBLite consensus disorder prediction 26 44 - -
Ahy19g3546 1030 Pfam MutS domain III 386 703 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 99 1025 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Ahy19g3546 1030 MobiDBLite consensus disorder prediction 1 92 - -
Ahy19g3546 1030 Pfam MutS domain V 758 955 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 MobiDBLite consensus disorder prediction 45 72 - -
Ahy19g3546 1030 SUPERFAMILY DNA repair protein MutS, domain I 113 227 IPR016151 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 SUPERFAMILY DNA repair protein MutS, domain III 386 708 IPR036187 -
Ahy19g3546 1030 ProSitePatterns DNA mismatch repair proteins mutS family signature. 836 852 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 Gene3D DNA repair protein MutS, domain I 108 233 IPR016151 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 99 1025 - -
Ahy19g3546 1030 Gene3D - 553 679 - -
Ahy19g3546 1030 Gene3D - 711 992 IPR027417 -
Ahy19g3546 1030 SMART DNAend 394 738 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ahy19g3546 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 958 IPR027417 -
Ahy19g3546 1030 PRINTS Proline rich extensin signature 69 94 - -
Ahy19g3546 1030 PRINTS Proline rich extensin signature 32 49 - -
Ahy19g3546 1030 PRINTS Proline rich extensin signature 15 31 - -
Ahy19g3546 1030 PRINTS Proline rich extensin signature 107 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3546 Ahy-Chr19 158181921 158188492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3546 K08736 - gmx:100789883 1456.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3546 19 158181921 158188492 Ahy19g3546 19 158181921 158188492 ECH
Ahy19g3546 19 158181921 158188492 Ahy9g2079 9 109474304 109480869 hybridization