Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3352 ATGCAAATGTTGCAAACCCTAGCACCCGCAAGGGCAGCAAAACCCTGTTTCATGGTGAATACATCATTGGCATGGCTACGAAACTTGAAAGCGAGAGTGAGAGTGCGTGCATTCTCTTTCTCCTCCTCCTCCTCCGACGATTACGGAGACCAATCACGCGGTGGCCTCCCCCGCTTCTACTCCGAAACTTTTCCTTCTTCCAAGGGTAGTGTTGTGCGTGTAAAAGGTGATGAATTTTGGCATATGACAAAAGTATTGAGGCTGGGTGCCGATGACAGGGTAGAGCTCTTCAACGGGAAGGGAGGTCTGGTAGAAGGATGCATACAGAACATTGATCGCACTGGACTTGATTTTGTTGCACTGAATGATCCAAAGCTAATACATCCACAGAACATGCAGTTGCATGTATTTGCTGGTTTTGGAACTTTGAAGGGTGGACGTGCTGACTGGCTTGTAGAGAAGTGCACAGAACTTGGAGCCAATAGTGTAACTCCACTACTTACTGAACGTTCTCCATCAATCTCAGAAAATCGGGTAGACAGATTGGAACGGGTAATCTTAGCGGCATCAAAACAATGTCAACGGCTGCATGAAATGGTCCTGAAACCTCCTGTAAAGGTTAATGACCTTCTCCATCTTATTGCACAGTCAAAGCTTTCTCTTGTTGCAACAGCAAAGGCATCTCCTGTTCTTAATGCATTGACAGAATTCAAAAAAGAAACTAGTGGCTTAATCGTAATTGGACCTGAAGGCGACTTCACCGAGAAAGAAGAGAGTATGATGATGGAAGCGGGTGCCATAGGTGTTAGTCTCGGGCCACATCGTCTAAGGGTTGAAACCGCCACAATAGCACTTCTATCAACTCTCATGTTATGGTCTGACTCTCACCGAAGCTAA 897 0.4604 MQMLQTLAPARAAKPCFMVNTSLAWLRNLKARVRVRAFSFSSSSSDDYGDQSRGGLPRFYSETFPSSKGSVVRVKGDEFWHMTKVLRLGADDRVELFNGKGGLVEGCIQNIDRTGLDFVALNDPKLIHPQNMQLHVFAGFGTLKGGRADWLVEKCTELGANSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMVLKPPVKVNDLLHLIAQSKLSLVATAKASPVLNALTEFKKETSGLIVIGPEGDFTEKEESMMMEAGAIGVSLGPHRLRVETATIALLSTLMLWSDSHRS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3352 298 Pfam RNA methyltransferase PUA domain 75 119 IPR046887 -
Ahy19g3352 298 Gene3D - 55 297 IPR029026 -
Ahy19g3352 298 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 70 290 IPR006700 GO:0006364|GO:0008168
Ahy19g3352 298 Pfam RNA methyltransferase domain 133 289 IPR046886 -
Ahy19g3352 298 SUPERFAMILY alpha/beta knot 132 293 IPR029028 -
Ahy19g3352 298 CDD RsmE-like 134 287 IPR046886 -
Ahy19g3352 298 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 56 297 IPR006700 GO:0006364|GO:0008168
Ahy19g3352 298 SUPERFAMILY PUA domain-like 59 118 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3352 Ahy-Chr19 156445647 156448233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3352 K09761 - gmx:100777253 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3352 19 156445647 156448233 Ahy19g3352 19 156445647 156448233 ECH
Ahy19g3352 19 156445647 156448233 Ahy9g2284 9 111804226 111806735 hybridization