Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3249 ATGGCCGCGACGCCGTCGTCCTCCGCCGCGGGAGCCACCAACATCATGCTCGCAATTTTCGAGAAGAAGACTAATTCCGTCGACCTGTACCGCCCTCTACGCAACTACATCGCATTCAACTACTCCGAGCGTGAGGCCCAGAACCTCGAAGACGATCTCCAAACCCTAAAGCAGCAACGCGCTGACATCGAGCGCCACTCCGATCCCTCCCTCCCTTCCCGCCGGGACCTTCTCCAGTCCTACTTCAGAGCCCTCTGCCTCGTTGAGACCCGATTCCCAATCTCCCCCGACCCGGCGCACGTCAACGCCCTCACCTTCGTCTGGTTCGACGCCTTCAAGCCCAAGCAGAAGTCTTCCCAGCAGAACATCCATCTCGAGAAGGCCTCCGTACTCTTCAATTTGGGAGCAGTGTACAGCCAAATTGGGCTTTCGTATGATCGCAACACCGTGGACGGCCGTCGCCAGGCCTCACATGCGTTTATAGCAGCCGCGGGGGCGTTTGCTTATTTGAGGGATAATGCGTCCATGAAAGCCTCCATTGGAGGATCCGCCACCGTGGACATCTCGGGGGAGTGCGCTGGGATGCTTGAGAAGCTGATGCTAGCTCAGGCTCAAGAGTGCGTCTTTGAGAACAGTATCGCCAAAGGAAGCACGCCAGGTGTTTGTTCCAAGATCTCTAGGCAGGTTGGGCTGTATTATGAGGAAGCTTTAGCTGCATTGAATGTTGCACCTTTAAACACACATTTTGATAAATCGTGGATAGCGCATGTCCAGCTGAAATCGGCTTTGTTCTATGCTGAAGCTTGCTTTAGGTATGGACTGGAGCTACATGAAAAAGAAGAAATAGCAGAGGAGATTGCACGACTCAGGAGTGCCATTAACGTGCTAACTGAGGCGAAGAGAAATTCAAAGGGTGCTGCAGCACAGATTCTCGATGCAATTGGCAAGTTAGAGGCCAATATTAACCGAAACTTGGAAAGGGCTGTCAAGGAGAACGACAGGGTTTACCTCATGAGAGTTCCTTCTCCCAGTTCCCTACCACCTCTTGCAGCATTTTCTATGGTGAAGCCAATGGCAATGAGTGAGGTGCTGGATGCAAGCAAAGAGAAGATGTTTGCTAGCCTTGTACCTGACAGTAGTACAAAGGCCCTCTCCAGGTATACTGAAATGGTAGATGACATTATAAGAATGCAGGCTGAGAAGCTACAGCAAGCTAGTGAGCTAACACGAGTTAGGCTCAAGGAAATGGAACTTCCGGATTCTATTCTTGCTTTGGAAGGAAATTTTACTCTTCCAACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGACCTGCTGGCTTGGAAGCAGAGTTACAGCAACTGAGGGACCTAAGGAGGGTGAATCAAGAATTATTGGTCCAGACTGAGGAGCTGTTGCAAAAGGAAGCAAGAGAAGATTCTCAATTTAGAAGCCAGTTTGGGACAAAATGGACTAGACCTCAATCAAGCACTTTGACAAAGAACTTGCAGGATAGGCTGAACAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGAAAGTGATGGTCGAATTGAGCGTTCGGTTAGAGAAAATTCGGCATTCATGTCAATCCTTGATGCCCGCCCGATTGAATCCGCACTTCCAACCTTGGCAAGGCCGATTATGTCTTTAGATCAAAATGAAGATGCTATTGTGGGATCTCTCAAGCAGAGCCTGAGGCAACTAGAAACTCTTGGAGCCCAAAGGGCTGGTCTTGAAGACATGCTTAAAGAGATGAAAAGAAAGGATGATATATTACCAAAGTTGATGACATCCACTGGCTCTCATGAGGATCTCTTTAAGAAGGAAATAGCAAAATATGACCATATTTGTGAAGAAATAGCTCAAAATATTGAGGCACAGGAGCAACTGTTGATGCAGATCCAGGCTCAGAATGATGAATTCTCGGCTCTCTTCAATCTTGAAGACTATAAAGCTTCGCGTGAAAAATGCTATAAGCAGATTGAAGCTGCCATAGCCAAGTTTCGAGAGATAAAAGACAACATTAATGAAGGGTTAAAATTCTATGTTACTCTGCAGGATGCGATCACAAATGTAAAGCAGCAGAGCAATGACTTCGTAATGACAAGGAACATCCAGTGCAGAGAAATGATTGAAGATGTTCAAAGACAAGTGGCTGGTCTGAGTTTCCAAGATAAAAGCTCAGGTGCTTTTAGTAGTAGCTACCCACCAGTTGGAAGCCAAAACCAAAGACCCAGTACACAACAAACAGATCCTCGTCCCCAAACACCTTATTATCAACCACCTGAGCAGCCTCCGGTTTCTTCCTACGGACAGCCCCTTCCCTCGTATGGTTCAGCAGCGCATCAGCCTCCACCTCCATACCACATTCCACCAACATCTGCCCCTCCATACCAACCCCATCAGGTTCATCAGCAGGCACCAGCAGAGTATGGCCAACCTGCATATCCTGGATGGCGTGGTCCATACTATAATGCGCCGGCTCAGCAACCTGGTTCTGTTCCCAGGCCTCCATATACTGTTCCATCTCCATACCCTCCACCTCATCAAGGTGGATACTATAAGCAGCAATAG 2604 0.4846 MAATPSSSAAGATNIMLAIFEKKTNSVDLYRPLRNYIAFNYSEREAQNLEDDLQTLKQQRADIERHSDPSLPSRRDLLQSYFRALCLVETRFPISPDPAHVNALTFVWFDAFKPKQKSSQQNIHLEKASVLFNLGAVYSQIGLSYDRNTVDGRRQASHAFIAAAGAFAYLRDNASMKASIGGSATVDISGECAGMLEKLMLAQAQECVFENSIAKGSTPGVCSKISRQVGLYYEEALAALNVAPLNTHFDKSWIAHVQLKSALFYAEACFRYGLELHEKEEIAEEIARLRSAINVLTEAKRNSKGAAAQILDAIGKLEANINRNLERAVKENDRVYLMRVPSPSSLPPLAAFSMVKPMAMSEVLDASKEKMFASLVPDSSTKALSRYTEMVDDIIRMQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLEAELQQLRDLRRVNQELLVQTEELLQKEAREDSQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVRENSAFMSILDARPIESALPTLARPIMSLDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSHEDLFKKEIAKYDHICEEIAQNIEAQEQLLMQIQAQNDEFSALFNLEDYKASREKCYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKSSGAFSSSYPPVGSQNQRPSTQQTDPRPQTPYYQPPEQPPVSSYGQPLPSYGSAAHQPPPPYHIPPTSAPPYQPHQVHQQAPAEYGQPAYPGWRGPYYNAPAQQPGSVPRPPYTVPSPYPPPHQGGYYKQQ* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3249 867 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Ahy19g3249 867 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Ahy19g3249 867 Coils Coil 627 654 - -
Ahy19g3249 867 MobiDBLite consensus disorder prediction 765 779 - -
Ahy19g3249 867 CDD BRO1_Alix_like_1 16 371 - -
Ahy19g3249 867 MobiDBLite consensus disorder prediction 789 808 - -
Ahy19g3249 867 MobiDBLite consensus disorder prediction 739 764 - -
Ahy19g3249 867 CDD V_Alix_like_1 377 713 - -
Ahy19g3249 867 Coils Coil 279 299 - -
Ahy19g3249 867 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Ahy19g3249 867 Coils Coil 39 66 - -
Ahy19g3249 867 Gene3D alix/aip1 like domains 423 704 - -
Ahy19g3249 867 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 5 856 - -
Ahy19g3249 867 Coils Coil 578 598 - -
Ahy19g3249 867 Pfam BRO1-like domain 16 394 IPR004328 -
Ahy19g3249 867 SMART BRO1_2 15 399 IPR004328 -
Ahy19g3249 867 MobiDBLite consensus disorder prediction 841 859 - -
Ahy19g3249 867 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Ahy19g3249 867 MobiDBLite consensus disorder prediction 739 867 - -
Ahy19g3249 867 PANTHER PCD6 INTERACTING PROTEIN-RELATED 5 856 IPR045251 GO:0071985
Ahy19g3249 867 Coils Coil 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3249 Ahy-Chr19 155642957 155647443 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3249 K12200 - gmx:100795465 1422.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3249 19 155642957 155647443 Ahy19g3249 19 155642957 155647443 ECH
Ahy19g3249 19 155642957 155647443 Ahy9g2392 9 112756267 112760699 hybridization