Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2354 ATGGCAAAGGGCGAAAAGAAACCGGCGGAGAAGAAGCCAGCGGAGAAGGCACCGGCGGAGAAAACCAAGGCGGAGAAGAAGATCCCGAAGGACGCGTCCTCCGGCGATAAGAAGAAGAAGAAGAAGGCGAAGAGCGTTGAGACCTACAAGATCTACATTTTCAAGGTTCTGAAGCAAGTTCATCCTGACATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCTCAAGAATCTTCTAGACTCGCGAGGTATAACAAGAAACCAACCATTACTTCGAGGGAGATTCAAACCGCTGTGAGACTCGTGCTTCCCGGTGAACTTGCCAAGCATGCCGTTTCGGAAGGGACTAAAGCTGTCACTAAGTTTACAAGTTCTTGA 411 0.4891 MAKGEKKPAEKKPAEKAPAEKTKAEKKIPKDASSGDKKKKKKAKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2354 136 ProSitePatterns Histone H2B signature. 104 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ahy19g2354 136 SMART h2b3 39 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ahy19g2354 136 PANTHER HISTONE H2B 4 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ahy19g2354 136 SUPERFAMILY Histone-fold 24 136 IPR009072 GO:0046982
Ahy19g2354 136 PANTHER HISTONE H2B 4 136 - -
Ahy19g2354 136 Gene3D Histone, subunit A 6 136 IPR009072 GO:0046982
Ahy19g2354 136 PRINTS Histone H2B signature 68 88 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ahy19g2354 136 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ahy19g2354 136 PRINTS Histone H2B signature 90 107 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ahy19g2354 136 PRINTS Histone H2B signature 49 67 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ahy19g2354 136 PRINTS Histone H2B signature 107 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ahy19g2354 136 MobiDBLite consensus disorder prediction 1 45 - -
Ahy19g2354 136 Pfam Core histone H2A/H2B/H3/H4 5 112 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2354 Ahy-Chr19 138129194 138129841 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2354 K11252 - gmx:100305731 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0512 16 9420558 9423919 Ahy19g2354 19 138129194 138129841 ECH
Ahy19g2354 19 138129194 138129841 Ahy19g2354 19 138129194 138129841 ECH
Ahy19g2354 19 138129194 138129841 Ahy9g1931 9 105945880 105946536 hybridization