Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1920 ATGTTCAACTTCAACAAAATCTTGTGCCTCCTATGTTTCCCTTTCCTGTGTTTTGATTTGTCTCATTGTACTTTATCTACTACTTCTTCACTAGTAAGTGACTTCACTTCTTGTTTGGCCAATCACAACATCAACAACTTCACCACTTTCCCTTACAAGGATTACGATAAGTCATCAGCTCATGATTACTTCAAGATTCTGAATTTTTCCATTCAGAATCTCCGGTTCGCCGGGGGTGCAGTTCCTAAGCCTGTAGCAATAGTACTTCCAGAGAGTTTGGAGCAGCTACAGAGAAGTGTAGCATGCTGCAGAGAATTCTCCTTTGGAATCAGAGTGAGGTGTGGTGGACATAGCTACGAAGGTACTTCCTCAGTTTCCGACGATGGATCACTCTTCACCATCATTGACATGATGAATTTGAACCATGTTTGGGTGGATATGGAGACAGAGACAGCAATGGTTGAAGGTGGTGCAACATTAGGAGAGACCTATTATGCCATCTCGCGAGCCAGCAATGAACACGGCTTCTCAGCAGGGTCATGTCCAACTGTAGGAGTTGGAGGACACATTGGTGGGGGAGGATTTGGGTTGCTCTCTAGAAAACATGGCCTCGCGGCCGACAATGTCATCGACGCGCTTCTTGTTGATGCCAATGGGCGATTGCTGAGCCGAGAATCGATGGGGGAAGACGTGTTTTGGTCTATTAGAGGAGGAGGTGGTGGAATTTGGGGAATTGTCTATGCTTGGAAAATCAAGCTATTGAAAGTTCCACAAGTTGTAACTGCTTTCGCGGTATCAAGAAATGGCACAAGAAATCATGTTGCCAATCTTGTTCATAAATGGCAAAATGTAGCACCAAATTTGGATGATGATTTCTACTTGTCATGCTTTCTTGGTGCTAATTTACCTGAAGCCAAATCTCTAGGCATATCAGCTACATTTAAAGGGCTTTTTCTTGGTCCTAAAGGAATTGCCATGTCCATCATAAACCATGATTTTCCTGAATTGGGAATTTTGGAACAAGAATGTGTGGAAATGAGTTGGATTGAGTCAATTGTTTTTTTCGCTGGCCTAAGTGATGGAGCCTCAGTTCCTGATTTGAAGAATAGGTACCTTGAAGACAAAGAATACTTCAAAGCCAAATCAGATTTTGTGAAGGCTCATATTCCTATTGAGGGAATTGAAATTGCACTGGAGATTCTAGAAAAGGAGCCTAAAGGGCTCGTAATTCTTGACCCGTCTGGTGGAAAAATGCATAGTATAAGCAGTGATTCAATTGCTTATCCACATAGAAAAGGAAACATTTTTTCAATTCAGTACTTGATATATTGGAAAGAAGAGGACAATGATAAGAGCAATGATTATATTGATTGGATGAAAGGGTTCTATGATTCTATGGCACCATTTGTTTCATGGGGTCCAAGGGCTGCATATGTTAATTACATGGACTTCGACCTTGGAGTTATGAACATGATTAGGTTTAGCAATGTGAAGGATGCTGTGGATCATGCAAGGGTTTGGGGTGAGAAGTACTTTTTGGGTAACTATGATAGGTTGGTGAAGGCCAAGACTTTGATTGACCCAAACAATGTTTTCACTAACGAACAAGGGATTCCTCCTTTGTACTTTGCTCGTCCTAGTGGCAAAGCAATGAGTGCATGA 1662 0.4188 MFNFNKILCLLCFPFLCFDLSHCTLSTTSSLVSDFTSCLANHNINNFTTFPYKDYDKSSAHDYFKILNFSIQNLRFAGGAVPKPVAIVLPESLEQLQRSVACCREFSFGIRVRCGGHSYEGTSSVSDDGSLFTIIDMMNLNHVWVDMETETAMVEGGATLGETYYAISRASNEHGFSAGSCPTVGVGGHIGGGGFGLLSRKHGLAADNVIDALLVDANGRLLSRESMGEDVFWSIRGGGGGIWGIVYAWKIKLLKVPQVVTAFAVSRNGTRNHVANLVHKWQNVAPNLDDDFYLSCFLGANLPEAKSLGISATFKGLFLGPKGIAMSIINHDFPELGILEQECVEMSWIESIVFFAGLSDGASVPDLKNRYLEDKEYFKAKSDFVKAHIPIEGIEIALEILEKEPKGLVILDPSGGKMHSISSDSIAYPHRKGNIFSIQYLIYWKEEDNDKSNDYIDWMKGFYDSMAPFVSWGPRAAYVNYMDFDLGVMNMIRFSNVKDAVDHARVWGEKYFLGNYDRLVKAKTLIDPNNVFTNEQGIPPLYFARPSGKAMSA* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1920 553 Gene3D - 259 473 - -
Ahy19g1920 553 Pfam FAD binding domain 85 222 IPR006094 GO:0050660
Ahy19g1920 553 ProSiteProfiles PCMH-type FAD-binding domain profile. 80 256 IPR016166 GO:0071949
Ahy19g1920 553 PANTHER OS08G0158400 PROTEIN 22 542 - -
Ahy19g1920 553 SUPERFAMILY FAD-binding/transporter-associated domain-like 60 257 IPR036318 GO:0050660
Ahy19g1920 553 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 22 542 - -
Ahy19g1920 553 Gene3D - 34 140 IPR016167 -
Ahy19g1920 553 Pfam Berberine and berberine like 477 539 IPR012951 GO:0016491|GO:0050660
Ahy19g1920 553 Gene3D - 145 540 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1920 Ahy-Chr19 110871805 110873559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1920 29 539 Miscellaneous Gene Families AT1G30760 41.586 1.58e-127 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1920 - - gmx:100790761 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1920 19 110871805 110873559 Ahy19g1920 19 110871805 110873559 ECH
Ahy19g1920 19 110871805 110873559 Ahy9g1558 9 83967712 83969613 hybridization