Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1078 ATGTTTTCGATTCCAGGGACTGGTATATTCAACAATAGCCAGAAGATCAAGGGTACCGTTGTGCTTATGAGCAAGAATGTTTTGGACTTTAATGCCATAACATCCGCCGGAAGCAGTGTTTCCGGCGCCGTCGGCGGAATCTTTGGCACTGTTAGTGATGTGGCTGGCTCGGTTGTCGATGGCGCCACCGCCATCTTCAGCCGTAGCATCGCCCTCAAGTTGATCAGTGCTACCAAGACTGATGGGCAAGGAAATGGGAAAGTTGGAAAGGAAACCTATTTGGAGAAACATCTTCCAACGTTGCCAAATTTGGGTGCCAAACAAGATGCATTCGACATCCATTTTGAATATGATGCTGATTTCGGGATTCCGGCTGCATTCTACATCAAGAACTATATGCAAGTTGAGTTCTTCCTTGTTAGTGTGACTCTTGAAGACATCCCAAACCATGGAACCGTTAACTTTGTTTGCAACTCATGGGTCTACAACTTCAAAAATTACAAAAAGGACCGCATCTTCTTTGCTAATGATGTTTATCTTCCAAGTGCAACCCCGGGTGCACTAGTGAAGTACAGAAATGAAGAACTGGAAAATTTAAGAGGAGATGGAACAGGGGAACGCAAGGAAGCAGATAGAATCTATGATTATGATGTCTACAATGATTTGGGTAACCCTGATGTGGATAACAGCCTTGCTCGCCCCATTCTTGGAGGATCTTCCGAATATCCTTACCCTCGCAGGGGTAGAACTGGCAGACGCAAGACTAAAAAGGATCCCAACAGTGAGGCACCAAGCTCAAGTACTTATGTTCCAAGAGATGAAATCTTTGGTCACTTGAAGTCCTCGGATTTCCTTACATACGGAATCAAATCTTTGGCTCAAAATGTTTTGCCAAGGCTCCAATCAGTGTTTGGTTTGAACAGCGAGTTTGATAGCTTCGACGATGCTCGTGCATTCTTTGAGGGTGGAATTTACCTCCCTACTGATATCATCAGCGATATCAGCCCCTTGCCAGTTCTTAAGGAAATCTTCCGTACAGATGGTGAACAAGCTCTCAAGTTCCCTCCACCTCATGTCATCCAAGTTAGTAAGTCTGCATGGATGACTGACGAAGAATTTGCCAGAGAGGTGATTGCTGGAGTAAATCCCAATGTTATTAAACGCCTTGAGGTGTTTCCACCACAAAGCACACTGGATCCCTCAATTTATGGTGATCAGACGAGTACAATTACAAAAGAAAGCCTTGAGACTAACCTAGAAGGACTTACTGTTGATGAGGCGATTGAAGGGAACAAATTATTCATCTTAGATTACCATGATGCATTCATGCCATACTTGAGGAAGATAAACGGGCTTAAGACTTCAAAGGCTTACGCAACAAGGACAATCCTGTTCTTGAAAAATGATGGAACATTGACACCATTGGCCATTGAATTAAGTGTGCCACACCCTGGTGGCGACACATTTGGTGCTGTTAGCAGAGTTGTCTTGCCTGCTAAAGAAGGTGCTGAAGGTACTATTTGGCTTCTTGCCAAGGCTTATGTCGTCGTCAATGATTCATGTTATCATCAACTCATGAGCCACTGGTTGAATACTCATGCTGCAATGGAGCCATTTATCATTGCAACATACAGGCATCTTAGTGTGCTCCATCCAATTCACAAGCTTCTAGAACCTCACTACCGCGACACCATGAATATCAATGGACTTGCAAGACAATCTCTGATTAATGCAGGTGGTATCATTGAGCAATCATTCTTGCCTGGAGGATTTTCTGTGGAGATGTCTTCTAAAGTTTACAAGAATTGGGTTTTCCCTGACCAAGCTTTGCCGGCTGATCTTATTAAGAGGGGATTGGCAGTTGAGGATCCATCGGCCCCCCATGGCGTTCGCCTCGTGATCGAGGACTACCCTTATGCAGTGGATGGACTGGAGATATGGGATGCTATCAAGACATGGGTCCAAGACTATGTCTCCTTGTACTACGCTTCAGATAATGAAGTCACAAAAGACACTGAACTCCAAAAATGGTGGAAGGAAGCTGTAGAGAGGGGTCATGAAGACCTGAAAGACAAGCCATGGTGGCCAAAACTGCAAACTCTTGAAGACCTGGTTCAGTCATGCAGCATTATTATATGGATCGGTTCGGCCCTTCATGCAGCTGTTAACTTCGGCCAATATCCTTATGGCGGCTTCATCCTGAACCGGCCAACAATTAGCAGAAAATTCTTACCGGAACTCGAAAGCGAGGAGTATCAAGAATTGGTTACAAACCCTCAGAAAGCTTACTTGAGAACAATTACAGGGAAATATGAGGCCCTAGTGGACATTTCGGTTATTGAGATATTGTCAAGGCATGCTTCTGATGAGGTGTATCTTGGGCAGAGAGACAATCCAAACTGGACATCGGATTCGAAGGCGATACAAGCCTTCAAGAAATTTGGAAACAAGTTGGCAGAGATCGAGGCGAAGATCGAGCAGAGGAACAAAGAACCAAGCTTTAGAAACAGAATTGGACCTGCTCATATGCCTTACAGTCTTCTCCTTCCTACCAGTGATGAAGGCCTTACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA 2604 0.4451 MFSIPGTGIFNNSQKIKGTVVLMSKNVLDFNAITSAGSSVSGAVGGIFGTVSDVAGSVVDGATAIFSRSIALKLISATKTDGQGNGKVGKETYLEKHLPTLPNLGAKQDAFDIHFEYDADFGIPAAFYIKNYMQVEFFLVSVTLEDIPNHGTVNFVCNSWVYNFKNYKKDRIFFANDVYLPSATPGALVKYRNEELENLRGDGTGERKEADRIYDYDVYNDLGNPDVDNSLARPILGGSSEYPYPRRGRTGRRKTKKDPNSEAPSSSTYVPRDEIFGHLKSSDFLTYGIKSLAQNVLPRLQSVFGLNSEFDSFDDARAFFEGGIYLPTDIISDISPLPVLKEIFRTDGEQALKFPPPHVIQVSKSAWMTDEEFAREVIAGVNPNVIKRLEVFPPQSTLDPSIYGDQTSTITKESLETNLEGLTVDEAIEGNKLFILDYHDAFMPYLRKINGLKTSKAYATRTILFLKNDGTLTPLAIELSVPHPGGDTFGAVSRVVLPAKEGAEGTIWLLAKAYVVVNDSCYHQLMSHWLNTHAAMEPFIIATYRHLSVLHPIHKLLEPHYRDTMNINGLARQSLINAGGIIEQSFLPGGFSVEMSSKVYKNWVFPDQALPADLIKRGLAVEDPSAPHGVRLVIEDYPYAVDGLEIWDAIKTWVQDYVSLYYASDNEVTKDTELQKWWKEAVERGHEDLKDKPWWPKLQTLEDLVQSCSIIIWIGSALHAAVNFGQYPYGGFILNRPTISRKFLPELESEEYQELVTNPQKAYLRTITGKYEALVDISVIEILSRHASDEVYLGQRDNPNWTSDSKAIQAFKKFGNKLAEIEAKIEQRNKEPSFRNRIGPAHMPYSLLLPTSDEGLTFRGIPNSISI* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1078 867 MobiDBLite consensus disorder prediction 230 269 - -
Ahy19g1078 867 Gene3D PLAT/LH2 domain 6 179 - -
Ahy19g1078 867 Pfam PLAT/LH2 domain 83 174 IPR001024 GO:0005515
Ahy19g1078 867 Gene3D - 180 279 - -
Ahy19g1078 867 Gene3D - 366 500 - -
Ahy19g1078 867 PRINTS Lipoxygenase signature 523 540 IPR013819 GO:0016702|GO:0046872
Ahy19g1078 867 PRINTS Lipoxygenase signature 543 563 IPR013819 GO:0016702|GO:0046872
Ahy19g1078 867 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Ahy19g1078 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 178 867 IPR013819 GO:0016702|GO:0046872
Ahy19g1078 867 Gene3D - 501 866 - -
Ahy19g1078 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 550 560 IPR020834 GO:0016702|GO:0046872
Ahy19g1078 867 PANTHER LIPOXYGENASE 8 867 IPR000907 GO:0016702|GO:0046872
Ahy19g1078 867 Coils Coil 811 831 - -
Ahy19g1078 867 Pfam Lipoxygenase 188 850 IPR013819 GO:0016702|GO:0046872
Ahy19g1078 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 14 179 IPR036392 GO:0005515
Ahy19g1078 867 CDD PLAT_LH2 15 176 IPR042057 -
Ahy19g1078 867 ProSiteProfiles PLAT domain profile. 47 175 IPR001024 GO:0005515
Ahy19g1078 867 SMART LH2_4 14 176 IPR001024 GO:0005515
Ahy19g1078 867 SUPERFAMILY Lipoxigenase 180 867 IPR036226 -
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 145 163 IPR001246 GO:0016491
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 210 226 IPR001246 GO:0016491
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 171 192 IPR001246 GO:0016491
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 243 262 IPR001246 GO:0016491
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 307 328 IPR001246 GO:0016491
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 780 794 IPR001246 GO:0016491
Ahy19g1078 867 PRINTS Plant lipoxygenase signature 458 482 IPR001246 GO:0016491
Ahy19g1078 867 PANTHER LIPOXYGENASE 8 867 - -
Ahy19g1078 867 ProSitePatterns Lipoxygenases iron-binding region signature 1. 523 537 IPR020833 GO:0016702|GO:0046872
Ahy19g1078 867 Gene3D - 280 365 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1078 Ahy-Chr19 17990556 17997636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1078 4 867 Acyl Lipid Metabolism Gene Families AT1G55020 55.986 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1078 K15718 - gmx:100127399 1373.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1078 19 17990556 17997636 Ahy9g0830 9 13804445 13811414 hybridization
Ahy8g1054 8 25522530 25526251 Ahy19g1078 19 17990556 17997636 PCT
Ahy19g1078 19 17990556 17997636 Ahy8g1054 8 25522530 25526251 PCT