Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1013 ATGCTTCCCATTCTCTTCCTCATCCCACTTCTCTTATCCACAACTTGCCATGCATCAGTCCAAGACTTCTGTGTGGCAGACACCACAGCATCAGACACCCCTGCAGGTTTCCCCTGCAAGCCGGAAGCCAATGTAACCTCCTCCGACTTCGTCTACACCGGCCTCTCCGTCCCTGGAAAAATCATTGCCCTCATAAACGCCGCCGTGACGCCGGCATTTGTCAGCCAATTCCCAGGCCTCAACGGCCTCGGCCTCTCGGCCTTGAGGCTAGACCTGGGTCCGGGTGGTGTGGTTCCTCTTCACTCCCACCCTGGCGCCACAGAGCTACTAATTGTGAAGAGTGGCCATATAACTGCCGGGTTCGTCTCTTCGGCGAACTCGGTTTATATAGCCACAGTTAAGACAGGAGAGCTTATGATTTTCCCTCAAGGCTTGCTGCATTTTCAGGTAGCTGCTGGAAAGAAAGGCGCCGTTGCTTTTGCTTTTTTTAGTAGCCCCAATCCTGGACTTCAGATTCTTGATTTTGCTTTGTTTGCAAGCAACTTCTCTACTCCATTGATTGCAAAGACTACTTTCCTTGACCCTGAATTGATCAAGAAGCTTAAGGGTGTTCTTGGTGGAAGCGGTTAG 630 0.5127 MLPILFLIPLLLSTTCHASVQDFCVADTTASDTPAGFPCKPEANVTSSDFVYTGLSVPGKIIALINAAVTPAFVSQFPGLNGLGLSALRLDLGPGGVVPLHSHPGATELLIVKSGHITAGFVSSANSVYIATVKTGELMIFPQGLLHFQVAAGKKGAVAFAFFSSPNPGLQILDFALFASNFSTPLIAKTTFLDPELIKKLKGVLGGSG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1013 209 CDD cupin_OxOx 17 205 - -
Ahy19g1013 209 Pfam Cupin 54 196 IPR006045 -
Ahy19g1013 209 Gene3D Jelly Rolls 17 208 IPR014710 -
Ahy19g1013 209 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Ahy19g1013 209 SMART Cupin_1_3 53 199 IPR006045 -
Ahy19g1013 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 205 - -
Ahy19g1013 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 205 - -
Ahy19g1013 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Ahy19g1013 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Ahy19g1013 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Ahy19g1013 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1013 Ahy-Chr19 16192177 16193190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1013 17 209 Miscellaneous Gene Families AT1G72610 63.212 6.23e-87 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1013 - - gmx:100500326 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1013 19 16192177 16193190 Ahy19g1013 19 16192177 16193190 ECH
Ahy19g1013 19 16192177 16193190 Ahy9g0774 9 12312445 12313459 hybridization