Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1011 ATGAAGAGCATGAGGATTCACGTTCTTTTCCTATTCTCATTGCTCTCAACCATTCCCCATTATTCCTATGCTTCTGTGAATGATTTCTGTGTAGCAGACCTGAAGGGACCAGATTCTCCTTCAGGCTATAACTGCAAGCCCGTTAGTGCAGTAACCGCGGATGACTTTGTGTATTCCGGCCTAGTTGCCGGAGACACCAACAACACCTTCAAAGCTGCATTAACCTCCGCATTTGTCACCGATTTTCCGGCCGTTAACGGGCTCGGAGTATCGGCGGCAAGGTTAGACATCGCGAAAGGAGGATCGATACCAATGCATACTCATCCCGGCGCCACGGAGTTACTAATCATGGTGGAAGGGGAGATAACTGCCGGGTTCATGACACCATTCGCACTCTATTCGAAAACCTTGAAACCCGGAGATGTTTTTGTTTTCCCACAAGGGCAGTTGCACTTTCAGGTGAATTCTGGTAAGAAAAAAGCCACTGCTTTTCTTGCTTTCAGTAGTGCAAACCCTGGTGCTCAGCTTCTTGATCTTCTTCTGTTTGGGAATGCCTTATCTTCTGACATTGTGGCACAAACTACCTTCCTCGATATTGACCAAGTGAAGAAGCTCAAGGCTCGTTTTGGTGGAAAAAACTTGAATAACCATATGTCTATGTAG 663 0.4646 MKSMRIHVLFLFSLLSTIPHYSYASVNDFCVADLKGPDSPSGYNCKPVSAVTADDFVYSGLVAGDTNNTFKAALTSAFVTDFPAVNGLGVSAARLDIAKGGSIPMHTHPGATELLIMVEGEITAGFMTPFALYSKTLKPGDVFVFPQGQLHFQVNSGKKKATAFLAFSSANPGAQLLDLLLFGNALSSDIVAQTTFLDIDQVKKLKARFGGKNLNNHMSM* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1011 220 Pfam Cupin 63 202 IPR006045 -
Ahy19g1011 220 PRINTS Germin signature 135 155 IPR001929 GO:0030145
Ahy19g1011 220 PRINTS Germin signature 106 126 IPR001929 GO:0030145
Ahy19g1011 220 PRINTS Germin signature 168 183 IPR001929 GO:0030145
Ahy19g1011 220 SUPERFAMILY RmlC-like cupins 28 210 IPR011051 -
Ahy19g1011 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 11 209 - -
Ahy19g1011 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 11 209 - -
Ahy19g1011 220 Gene3D Jelly Rolls 24 213 IPR014710 -
Ahy19g1011 220 SMART Cupin_1_3 59 203 IPR006045 -
Ahy19g1011 220 CDD cupin_OxOx 26 209 - -
Ahy19g1011 220 ProSitePatterns Germin family signature. 101 114 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1011 Ahy-Chr19 16130107 16130912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1011 4 213 Miscellaneous Gene Families AT5G20630 56.132 1.48e-76 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1011 - - gmx:100527498 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1011 19 16130107 16130912 Ahy19g1011 19 16130107 16130912 ECH
Ahy19g1011 19 16130107 16130912 Ahy9g0772 9 12270474 12271300 hybridization