Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0793 ATGGCCGCGTTGATGATGGTTGGTGCCACTGCTACAGTTACTCCCTGGGCGAAGGTGGTTGCTCCACCCATCATTCTCCATCACCATCGAAGAATCACCGCCACCTGCTTCCTCCGAAGAGCTTTCTCACTCAAAGCTTCTTCTCTCTCTCATCAACACCAAGAACCTTCACCCGTTCGCGTCCGTTTCGCGCCTTCTCCTACCGGTAACCTCCACGTTGGCGGCGCCAGAACTGCACTCTTCAATTACTTGTTCGCAAGGTCCAAAGGTGGGACATTTGTGTTGAGAATTGAGGATACTGACTTGGAGAGGTCTACCAAGGAATCTGAGGAAGCCCTTCTTCGAGATCTTTCATGGCTTGGCCTTGGATGGGATGAAGGCCCTGGTGTTGGTGGGGATTATGGTCCATATAGGCAATCCGAGAGGAACTCTTTGTACAAACAATATGCTGAGAAACTCCTCGAATCTGGCCAGGTTTATCGATGCTTTTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGTTGCCAAATTAAAGCAACTGCCTCCAGTGTACACAGGTAAATGGGCCAATGCAACAAATGAGGAAGTAGAAGAAGAGCTGACAAAGGGAACTCCTTATACATATCGGTTTCGTGTCCCCAAAGGAAATTTAAAAATTAATGACATAATACGTGGCGAAGTTAGTTGGAGCTTGGATACGCTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAGCCTGTTTACAACTTTTGTGTAACAGTGGATGATGCAACCATGGCTATTTCCCATGTTATAAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATATAAGGCTTTAGGTTTTCCCATGCCTTATTTTGCACATGTTTCCTTGATTTTGGCTCCTGATCGGAGTAAATTATCAAAACGACATGGTGCAACATCAGTGGGTCAGTTCAGGGAGATGGGATACCTACCTGAAGCAATGGTGAATTACCTTGCATTATTAGGCTGGGGTGATGGAACTGAAAATGAGTTTTTCACCCTTAATCAACTCGTTGAAAAATTCACTATTGAACGTGTTAACAAAAGTGGTGCTGTTTTTGATTCCACGAAGTTAAGGTGGATGAATGGTCAGCATTTAAGGGCACGGCCATCACAGGAAGTGGCCCAACTTATTGGAGACCACTGGAAGGCATCTGGCTTACTCACAGTATCAACAGGGCCGTTTGTTGATGAGGCAATTGAGCTACTTAAGGATGGAATTGACTTGATACCTGATGCAGATACGGCGCTTTCTAACTTGCTTTCTTATCCAATACATTCTACTTTACAAAGCCATGAAGCAGAATCAGTCATACAAGACAATCTCTCCAATTTTTTTGTCAGCCTGTTGGCTGCCTATGATAATGGTGAGCTGGTAGCTGCACTTGAAGAAGGCCATGATGGTTGGAAAAAGTGGGTGAAAGGATTCGGTAAATCCCTTAAGCGCAAGGGGAAATCTCTTTTCATGCCTCTCCGACTTCTGTTGACTGGAAAACTCCATGGACCGGATATGGGAGCTAGTGTGGTATTGCTCTATAAAGCTGGAACTACTAGCATTGTTGCTCCTGAAGCTGGCTTTGTGACACTCGATGAAAGATTTAAAATACTTCGGCAGATTGACTGGGAAACATTGTCTAAGGATCATCCTGTCAAAGAGACTGCTGGTTCTGTATCTAACTGA 1722 0.446 MAALMMVGATATVTPWAKVVAPPIILHHHRRITATCFLRRAFSLKASSLSHQHQEPSPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGTFVLRIEDTDLERSTKESEEALLRDLSWLGLGWDEGPGVGGDYGPYRQSERNSLYKQYAEKLLESGQVYRCFCSNEELEKMKEVAKLKQLPPVYTGKWANATNEEVEEELTKGTPYTYRFRVPKGNLKINDIIRGEVSWSLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFTLNQLVEKFTIERVNKSGAVFDSTKLRWMNGQHLRARPSQEVAQLIGDHWKASGLLTVSTGPFVDEAIELLKDGIDLIPDADTALSNLLSYPIHSTLQSHEAESVIQDNLSNFFVSLLAAYDNGELVAALEEGHDGWKKWVKGFGKSLKRKGKSLFMPLRLLLTGKLHGPDMGASVVLLYKAGTTSIVAPEAGFVTLDERFKILRQIDWETLSKDHPVKETAGSVSN* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0793 573 Gene3D - 442 533 IPR020751 -
Ahy19g0793 573 TIGRFAM gltX_bact: glutamate--tRNA ligase 59 528 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Ahy19g0793 573 CDD GluRS_core 59 381 IPR033910 GO:0006424|GO:0008270
Ahy19g0793 573 Pfam tRNA synthetases class I (E and Q), catalytic domain 59 374 IPR020058 GO:0004812|GO:0005524|GO:0043039
Ahy19g0793 573 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 43 552 - -
Ahy19g0793 573 Hamap Glutamate--tRNA ligase [gltX]. 58 541 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Ahy19g0793 573 Pfam Anticodon binding domain 406 527 IPR045462 -
Ahy19g0793 573 PRINTS Glutamyl-tRNA synthetase signature 247 257 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ahy19g0793 573 PRINTS Glutamyl-tRNA synthetase signature 62 74 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ahy19g0793 573 PRINTS Glutamyl-tRNA synthetase signature 76 87 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ahy19g0793 573 PRINTS Glutamyl-tRNA synthetase signature 263 271 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ahy19g0793 573 PRINTS Glutamyl-tRNA synthetase signature 91 104 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ahy19g0793 573 PANTHER GLUTAMATE--TRNA LIGASE 43 552 - -
Ahy19g0793 573 Gene3D HUPs 49 383 IPR014729 -
Ahy19g0793 573 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 368 527 IPR008925 GO:0000049
Ahy19g0793 573 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 65 76 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ahy19g0793 573 SUPERFAMILY Nucleotidylyl transferase 59 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0793 Ahy-Chr19 11395091 11401468 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0793 K01885 - gmx:100810730 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0793 19 11395091 11401468 Ahy2g0114 2 1244799 1256267 hybridization