Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2689 ATGAGCTCAATCCCACCATGCCTTCGTCTCTTGCAAGGAACCATAAATCCAAGCACGAGAGAGTTAAAGCGAATCCACGCCCACGCAATCACCAATGGCCTTGCACGATTCTCCTACGTCTCCAGCAGACTCTTGGCCTTCTATTTCCAATGCCACCAGCGCAACCGCCGCAATATGCGCTGTTTAGAGGCCTTTTTCATTCACATGCCAATTCACACTGTCTTCGATTTCAATGTCATGATAACAGCTTTTTCAAGAGACTCACAATTTTACAACTGTTTTCTGCTTTTCAAACAAATGCTAGCCACTGGTGTTAGGCCCAACTCTCACACCTTCACCATGTTTGTCAAATCTTGCCGTGGCTCTTTGTCTCTCCTCCAACAAGCCCATGCTCAAGTGGTGAAGTTAGGGAGTGTGGATTATGATGCTTTTGTAGTGAGTTCTTTGATTGGTGTTTATTGTGATCATGGAGAGGTTGGTGTTGCACGCCAGGTGTTCGATGAATGTTCCAACAAGAATGTGGTGTGTTGGACTGGTCTTGTTACTGGTTATTGTAATAATGGTTTAATTGAGAAAGCAAGGCTGTTGTTTGATGAGATGCCGCAAAGGAATGAGGTATCCTACAGCGCCATGGTGTCTGGGTATGTGAGAAATGGTTGTTTCAATGAGGGCATTCAAGTTTTCCACGAGCTCAAGTGTTGTGGAAATGATGTTAATTTGAATGGCTCTCTTCTGGTGAGTGTGCTCAATGCATGTGCTGCTGTGGGTGCATTTGAAGAAGGCAAATGGATTCACAGTTACATTGATGAAAATGGTTTGGAGTATGAACTCGAACTGGGGACTGCGTTGATTGATTTCTACACCAAGTGTGGGTGGGTAGAAGAGGCAGAGAAAGTGTTTGATAGTATGCCTAGTAAGGATGTTGCTACTTGGAGTGCTATGATATTGGGTTTGGCTATTAATGGAAAGAATTATATGGCTCTTGAGCTTTTCGATAAGATGGAGAAGGTTGGACCCAAACCCAATGCAGTTACTTTTGTTGGTATTCTAACTTCCTGCAATCACAAGGACTTGTTGACTAAAGCGTGGTGGTTTTTTGAACGAATGAGTGGAAAATATGGCATCCTACCATCCATTGAACACTATGGATGCATGGTTGATATTTTGGCGCGAGGCGGGCGAATCAAAGATGCTTTAGCGTTAGTTGCTAGGATGCCGATAGAACCGGATGGAGCCATATGGGGGTCTTTGCTCAACGGATGCATGATGCATTGTCATGTTGAACTGGCACATAGAGTTGGGAAGTATTTGATAGAATTGGAGCCTCAACGTAGTGGATATTACATCCTTCTAGCAAACATGTATGCAAGTACGGGCAAATGGGAAGGTGTCTCCGAGACGAGAAGACTGATGAAAAAAAGGGGAGTGTCAACCATTTCTGCTTGGAGTTTCATAGAAATTGACCAGTCCATCCACAAATTTGTTGCTGATGATAAGTGTTGTACATATTCAGAAGAAATTTACAGAGTTTTAAACCACTTGAGTAAGGGACTCGAGGATTTCTCCAGATCAAAAGATGCATTCTATTTATTTGAAGTAATATAA 1605 0.4299 MSSIPPCLRLLQGTINPSTRELKRIHAHAITNGLARFSYVSSRLLAFYFQCHQRNRRNMRCLEAFFIHMPIHTVFDFNVMITAFSRDSQFYNCFLLFKQMLATGVRPNSHTFTMFVKSCRGSLSLLQQAHAQVVKLGSVDYDAFVVSSLIGVYCDHGEVGVARQVFDECSNKNVVCWTGLVTGYCNNGLIEKARLLFDEMPQRNEVSYSAMVSGYVRNGCFNEGIQVFHELKCCGNDVNLNGSLLVSVLNACAAVGAFEEGKWIHSYIDENGLEYELELGTALIDFYTKCGWVEEAEKVFDSMPSKDVATWSAMILGLAINGKNYMALELFDKMEKVGPKPNAVTFVGILTSCNHKDLLTKAWWFFERMSGKYGILPSIEHYGCMVDILARGGRIKDALALVARMPIEPDGAIWGSLLNGCMMHCHVELAHRVGKYLIELEPQRSGYYILLANMYASTGKWEGVSETRRLMKKRGVSTISAWSFIEIDQSIHKFVADDKCCTYSEEIYRVLNHLSKGLEDFSRSKDAFYLFEVI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2689 534 Pfam PPR repeat family 74 119 IPR002885 -
Ahy18g2689 534 Pfam PPR repeat family 306 353 IPR002885 -
Ahy18g2689 534 Pfam PPR repeat 381 405 IPR002885 -
Ahy18g2689 534 Pfam PPR repeat 206 235 IPR002885 -
Ahy18g2689 534 Pfam E motif 424 485 IPR046848 -
Ahy18g2689 534 Pfam PPR repeat 173 200 IPR002885 -
Ahy18g2689 534 Gene3D Tetratricopeptide repeat domain 234 352 IPR011990 GO:0005515
Ahy18g2689 534 Gene3D Tetratricopeptide repeat domain 17 171 IPR011990 GO:0005515
Ahy18g2689 534 TIGRFAM PPR: pentatricopeptide repeat domain 281 308 IPR002885 -
Ahy18g2689 534 TIGRFAM PPR: pentatricopeptide repeat domain 175 204 IPR002885 -
Ahy18g2689 534 TIGRFAM PPR: pentatricopeptide repeat domain 77 108 IPR002885 -
Ahy18g2689 534 TIGRFAM PPR: pentatricopeptide repeat domain 206 235 IPR002885 -
Ahy18g2689 534 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 521 - -
Ahy18g2689 534 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 521 - -
Ahy18g2689 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Ahy18g2689 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Ahy18g2689 534 Gene3D Tetratricopeptide repeat domain 172 233 IPR011990 GO:0005515
Ahy18g2689 534 Gene3D Tetratricopeptide repeat domain 353 511 IPR011990 GO:0005515
Ahy18g2689 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2689 Ahy-Chr18 130043488 130047554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2689 23 514 Glycoside Hydrolase AT3G49170 30.364 2.64e-73 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2689 - - cam:101514149 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2689 18 130043488 130047554 Ahy18g2689 18 130043488 130047554 ECH