Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1392 ATGGTTCTGCCGCAGTGCCGCCGTCGTCCGTGCTGTCGGCGCATCCGCGTCCTCTCTTGTAGCTCGGCGTCCTCCTTCCCCCTGTCCCCGTCCTCCCTGGCTTCTCTGTTCGAGGCTCGGAGCAGCTCGCCGCCATTTCGCCAGTCGCCGTCCGTGTCTCCGTCGAAGAAATATAAAAACATTACACAATATACACCTCCTCCAAATACCTGCCAGATATTTGGGCTTAGAAGCTCCTTTCGCATAATAGACCTCACCATCAATTCAATTCCGCTGATGCCGTACATGTTCTGGCAACTCTGCCGGTGGGAACTCAAAATCCTATTCTACCCTGCCACAGCCACTCTCCTTCGAACTCCAACCACATGCTTCCTGCATTCCCTTTCGGACCCACCCCACTGGAAACCACCATCACCACCACCGCCAATCGTTTATCTTCAGAATCTCCTCAAGTTCCGGAGGGACAAGCCCGCCATCGAAGTGGAGCGAGCACTCGACCTATGTGGGTTCCAGCTTAGCGACAAACTCGTCTTCGAAGTGCTTAAACGGCATCATTCTGATTGGAGGCCCGCCCTCGTGTTCTTTAATTGGGCTTGTAAAGCGAGTCCCGAGCGAAATGGGTATGTGCCAAGTTCCGTCGTTTTCAATGAGATTGTGGATATTCTCGGGAAGATGAAGCGGTTTGAGGAGCTCTACCAGGTGCTCGATGAAATGTCCCATAGACAGGGTGTCATGAATGAGTTGGTTTTTTCCACATTGATTCGTAGGTATGTGGGTGCACATAAGGTGGAGGAAGCTGTTGGAATATTCTATAGGAGGAAAGAGTTTGGATTGGAGATTGATTCTAAAGCATTTAGGACCCTCTTGATGTGGTTGTGCAGGTACAAGCATGTAGAAGATGCAGAAACTTTGTTTCGCAGCAAGGTGAATGAGCTTCCACCTGATATAAAGTCCTGGAACGTGATCCTCCATGGTTGGTGCATCTTAGGGAACACACATGAGGCAAAGAGGTTGTGGAAAGACATATTGGCATCTAAGTGCAAGCCAGATCTTTTCACTTATGCAACATTTATCAAGGCAATGACCAAGAAGGGGAAGCTTGGCACTGCACTGAGGTTGTTCCATGGCATGTGGGATAAAGGTTGCAAGCCCGATGTTGTGATATGCAACTGTATTGTTGATGCTCTTTGTTTCAAAAAGAGGGTTCCTGAGGCATTGGAAGTTTTCAAGTGCATGAGCGAAAGGGGTGTTGAACCTAATGTGGCTACTTACAACTCCTTGATCAAACACATGTGTAAGATTCGGCGAATGCAGAAGGTATATGAGCTAGTGAGTGATATGGAAAGGAGGGAGGGGAATTGTTTGCCTAATGCTGTTACTTATAGCTACTTGCTGGGTTCCTTGAAGGAGCCGAAGGAAGTTCCTGTGATTTTGGAGAGGATGGAGAGAAATGGGTGTAGCATGAATGATGATGTTTACAACTTGGTTTTGAGGTTGTACATGGAATGGGATGACCAGGATGGGGTGAGAAGAACATGGGAAGAGATGGAAAGGAATGGATGGGGACTAGATAGGCGATCTTATACAATCCTGATTCATGGGCACCTCAAAAGTGGGAGGACGAAGGATGCCTTGCGCTATTTTAGGGAGATGGTGTCTAAGGGAATGGAGCCTGAGCCAAGAACTGAGAAACTATTGAGTTCCATGAACATTCAGTCAAAAGAAAGAACAGAAAAACAAAAAGGATGA 1749 0.478 MVLPQCRRRPCCRRIRVLSCSSASSFPLSPSSLASLFEARSSSPPFRQSPSVSPSKKYKNITQYTPPPNTCQIFGLRSSFRIIDLTINSIPLMPYMFWQLCRWELKILFYPATATLLRTPTTCFLHSLSDPPHWKPPSPPPPIVYLQNLLKFRRDKPAIEVERALDLCGFQLSDKLVFEVLKRHHSDWRPALVFFNWACKASPERNGYVPSSVVFNEIVDILGKMKRFEELYQVLDEMSHRQGVMNELVFSTLIRRYVGAHKVEEAVGIFYRRKEFGLEIDSKAFRTLLMWLCRYKHVEDAETLFRSKVNELPPDIKSWNVILHGWCILGNTHEAKRLWKDILASKCKPDLFTYATFIKAMTKKGKLGTALRLFHGMWDKGCKPDVVICNCIVDALCFKKRVPEALEVFKCMSERGVEPNVATYNSLIKHMCKIRRMQKVYELVSDMERREGNCLPNAVTYSYLLGSLKEPKEVPVILERMERNGCSMNDDVYNLVLRLYMEWDDQDGVRRTWEEMERNGWGLDRRSYTILIHGHLKSGRTKDALRYFREMVSKGMEPEPRTEKLLSSMNIQSKERTEKQKG* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1392 582 Gene3D Tetratricopeptide repeat domain 296 378 IPR011990 GO:0005515
Ahy18g1392 582 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 118 581 - -
Ahy18g1392 582 SUPERFAMILY TPR-like 184 554 IPR011990 GO:0005515
Ahy18g1392 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Ahy18g1392 582 MobiDBLite consensus disorder prediction 556 582 - -
Ahy18g1392 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Ahy18g1392 582 Gene3D Tetratricopeptide repeat domain 379 449 IPR011990 GO:0005515
Ahy18g1392 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Ahy18g1392 582 Pfam PPR repeat family 384 433 IPR002885 -
Ahy18g1392 582 Pfam PPR repeat family 314 362 IPR002885 -
Ahy18g1392 582 Gene3D Tetratricopeptide repeat domain 161 295 IPR011990 GO:0005515
Ahy18g1392 582 Gene3D Tetratricopeptide repeat domain 450 581 IPR011990 GO:0005515
Ahy18g1392 582 Pfam PPR repeat 527 555 IPR002885 -
Ahy18g1392 582 TIGRFAM PPR: pentatricopeptide repeat domain 352 386 IPR002885 -
Ahy18g1392 582 TIGRFAM PPR: pentatricopeptide repeat domain 387 421 IPR002885 -
Ahy18g1392 582 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Ahy18g1392 582 TIGRFAM PPR: pentatricopeptide repeat domain 527 558 IPR002885 -
Ahy18g1392 582 TIGRFAM PPR: pentatricopeptide repeat domain 318 350 IPR002885 -
Ahy18g1392 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Ahy18g1392 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 450 IPR002885 -
Ahy18g1392 582 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 118 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1392 Ahy-Chr18 26354453 26358814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1392 197 581 Glycosyltransferase AT1G05670 24.936 8.27e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1392 - - ahf:112769232 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1392 18 26354453 26358814 Ahy18g1392 18 26354453 26358814 ECH