Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1361 ATGGCTGCTGCCACTGCCAGTATCGTCGGAACTTCTTCATGGAGTCTTCGAAGAGCAGCAGCACAAGCTTTCGCACTCTCTCAATCCCATTTTCTCTGCGCTACCAATCCCTACTTCTCTTTCCCAAGGACCCTTTGCACTCTGCCTCTCTCTGTTTCTGCTTCTTCAGCTTCAGATGTAAGTCACACAGTGCAAGCTATAAAGGGAGATGTCGATGAGCTACTGAATGGAGTGGTAGAGAAAAGTGTAATAAAAGAAGTGAAGCATATTCTTGAGATGGCTAGACGTGCATCATTAAGACGAGAGATTCTCCATACAGATTTTCTAACACCTCCAGTGCTTAAAGAATCTATGAAAGTTTTGGAGAAATTAGCAGACGTGAAAGCAATTGCTCAAGGAGGTTACCCCCAGGCTGAACGTTGTCGAATTTCTGTTGGACATCCAGAAGAACTGACAAGCGATCCAGATATCATTTCGGCATTGAGTGTCTCTGGGAACTTTCGATTTGAATCTTGTTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTACTAGGGAGAAAGTTGGAGATATTATATTGCAGGGAGAACAGGGTGCTCAGATACTTGTCGTACCAGAGCTTGTTGAATTTCTAATGTCGTCATTGGATAAGGTTCGTAATGTTCCTGTAAGTTGCAGTAAGATACCATTAATTTCTCTTGATTACGAGCCACCAAGAACAATCACGTTTAAAACTATAGAAGCATCGCTCAGAGTTGATGCCTTGGCTAGTGCAGGTTTTAAGATTTCACGTTCCAAGCTAGTTGACTTGATCAGCAATGGTGATGTGCGTATAAACTGGACCCCTGTTACTACCAAAGGAACCACACTGAAAAGTGGAGACATTGTATCAGTTAGTGGAAGAGGTAGATTAAAGATTGGAGAAATTAACTCAACAAAGAAAGGGAAGTTTGCAGTGGAGCTTATTCGGTATTTATGA 987 0.4235 MAAATASIVGTSSWSLRRAAAQAFALSQSHFLCATNPYFSFPRTLCTLPLSVSASSASDVSHTVQAIKGDVDELLNGVVEKSVIKEVKHILEMARRASLRREILHTDFLTPPVLKESMKVLEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSVSGNFRFESCSHGDFLGSILGTGITREKVGDIILQGEQGAQILVVPELVEFLMSSLDKVRNVPVSCSKIPLISLDYEPPRTITFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRINWTPVTTKGTTLKSGDIVSVSGRGRLKIGEINSTKKGKFAVELIRYL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1361 328 CDD S4 254 308 - -
Ahy18g1361 328 Pfam Putative RNA-binding domain in YlmH 159 233 IPR040591 -
Ahy18g1361 328 ProSiteProfiles S4 RNA-binding domain profile. 253 313 - -
Ahy18g1361 328 Gene3D - 243 304 IPR036986 GO:0003723
Ahy18g1361 328 TIGRFAM PS_II_S4: photosystem II S4 domain protein 84 326 IPR017506 -
Ahy18g1361 328 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 61 328 - -
Ahy18g1361 328 SUPERFAMILY Alpha-L RNA-binding motif 112 316 - -
Ahy18g1361 328 SMART s4_6 253 310 IPR002942 GO:0003723
Ahy18g1361 328 Pfam S4 domain 257 299 IPR002942 GO:0003723
Ahy18g1361 328 Gene3D - 80 146 - -
Ahy18g1361 328 Gene3D - 154 236 IPR012677 -
Ahy18g1361 328 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 61 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1361 Ahy-Chr18 25150355 25155132 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1361 - - gmx:100793767 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1361 18 25150355 25155132 Ahy18g1361 18 25150355 25155132 ECH
Ahy18g1361 18 25150355 25155132 Ahy8g1986 8 39693934 39699542 hybridization