Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1340 ATGATGAGCCGATCGAAATTGGAGCCGCCGTCTCATCAGGCGCCGTGCATCCCCAAATATGCGTCTCCCGACACCTCCAAAAGGAAAGCATATTCTTCTTCTTGTTCTCCGAAGATGGAGATGGACCCTGACGTTGTTGAAATTCTTCCCCCAATTCACCGAACTTCCAGATTGGTTAAGCAAAATCAGGAAAGTGGGTTTGAGACTTCTACTGGTCATTCTTCGGTACCACATAACCTAACTAGTGTTGATGCTCATGTTGCGGATCTATCATATGATGATGATGAGGATGCTGATGATGACTACATTGATTTTATTTCTGAAGAGTATGCACAAGTCGATGAGTATGCTTTATTACAGGCACACTTTGATAATGTGGATATACCTCCCGGAATTGAGGCACCGTTTACTTGGTTGCCAGAATATGAACAAGGTTTGAAGCAAACTGGGAATAGTTCTTTGCATCCTTGGTATCCTACACAATCAGATGCTGAAATTCCTCAGGTGATAGAGTCAGCTAAATCTAAAATCATAGGATCTTCAACAGGTGCTTCTAATTTTCAAATGAACATGGGTGATGTTGATCACTCCTCTGGAATAAATTTGGCTTCTCAATCTGCTCATAGTAAGAAGAAAGTAGCTAATTCACAACGCAGGGTTCGTGGTTCGCACACATTATCAGGACCCCACTCATCTAAGTCTCAATGGTTTTCAGGACCTTTCCATGTTAAAAAGACACCTGCTATTGGTTTCGTCGGCAATTCAGAGGCTGTGAAACCACCACCGGCAGGTGCACCACCATTTTGGAGGAAATTTAAAACTGCTAAGAAGCTAGGTGGCAGTAGCAGTTTGTACCATCCAAGTTTCATTGGACAGAATGGATCATTTCATCCACCAGGAATGGAATCAAAAGGCCCATGGTCAACAAATTTTCAGAATTTTATGCCAACTTTTTCTGATTACAATGCTAATTCAACTAGCTATGGTCCACTTGATTTTCTTCATCCTCCTCCTGGGCATATGCAGTTTAACACATCGGTTCACAATTCTGCCGGAGAAGGAAATAGTGGAGATAGCCCAGTTGTGGCCATCTCTGATGAAGATCGGGATGAAATCATGATGAAATTTCGAAGTTTTAAACAATTTGACACTGTTGAAGATCCATCAGATCATCGCTTTGTTGGCTATAACTCTTCCTTGAAGCAGCATCCAAAGAATTGGGCTAAAAAAATCCAGGATGAGTGGAAGATTTTGGAGAAGGATTTGCCAGATACAATATTTGTCCGAGTTTATGAATCAAGGATGGATCTTTTGAGGGCCGTTATTATCGGAGCAGTGGGGACTCCTTATCATGATGGTCTTTTCTTCTTTGATGTTTTCTTCCCCAGTGGCTATCCCAATGTACCGCCGCAAGTTTACTACCACTCTGGAGGTCTTCGACTCAACCCGAACTTGTATAATTGTGGCAAAGTATGCCTTAGCCTGCTTAATACCTGGTCTGGCAACAAGAACGAGAAGTGGCTTCCAGGTGTTTCAACAATTCTGCAGGTTCTGGTCTCTATACAAGGTCTAATTCTCAATACGAAGCCTTACTTTAACGAACCTGGATATGCACACATGAGTGGTTCCGCAAATGGTGAAACAAAGTCCCTGCAGTATAATGAGGACACATTCATCCTTTCATTAAGAACAATGATGTATATGATGAAAAGGCCCCCCAAGCATTTTGAGAACTTTGTTACGGGGCATTTCTATAGCCGAGCTCATGATATTCTAGTGGCATGCAAAGCGTACATGGAGGGTGCGCAAGTTGGATGTTTGGTCAAGGGTGGGGTTCAGGATGTCGACGAAGGCGACAAAAGCTGCTCGAAGCAGTTCAAGGAATCTCTAACTGGATATGTGAGTATGATTGTCAAAGAGTTTGCAAAAATTGGAGTTAAGGACTGTGAGAAGTTCCTCTCCACCAAAAAAATAGTGAACAAGCCTTTGTCTTTGCCTGCAGCCTGA 2007 0.427 MMSRSKLEPPSHQAPCIPKYASPDTSKRKAYSSSCSPKMEMDPDVVEILPPIHRTSRLVKQNQESGFETSTGHSSVPHNLTSVDAHVADLSYDDDEDADDDYIDFISEEYAQVDEYALLQAHFDNVDIPPGIEAPFTWLPEYEQGLKQTGNSSLHPWYPTQSDAEIPQVIESAKSKIIGSSTGASNFQMNMGDVDHSSGINLASQSAHSKKKVANSQRRVRGSHTLSGPHSSKSQWFSGPFHVKKTPAIGFVGNSEAVKPPPAGAPPFWRKFKTAKKLGGSSSLYHPSFIGQNGSFHPPGMESKGPWSTNFQNFMPTFSDYNANSTSYGPLDFLHPPPGHMQFNTSVHNSAGEGNSGDSPVVAISDEDRDEIMMKFRSFKQFDTVEDPSDHRFVGYNSSLKQHPKNWAKKIQDEWKILEKDLPDTIFVRVYESRMDLLRAVIIGAVGTPYHDGLFFFDVFFPSGYPNVPPQVYYHSGGLRLNPNLYNCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSANGETKSLQYNEDTFILSLRTMMYMMKRPPKHFENFVTGHFYSRAHDILVACKAYMEGAQVGCLVKGGVQDVDEGDKSCSKQFKESLTGYVSMIVKEFAKIGVKDCEKFLSTKKIVNKPLSLPAA* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1340 668 Pfam Ubiquitin-conjugating enzyme 411 535 IPR000608 -
Ahy18g1340 668 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 406 566 IPR000608 -
Ahy18g1340 668 MobiDBLite consensus disorder prediction 1 41 - -
Ahy18g1340 668 SUPERFAMILY UBC-like 394 575 IPR016135 -
Ahy18g1340 668 Gene3D Ubiquitin Conjugating Enzyme 365 647 IPR016135 -
Ahy18g1340 668 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 69 657 - -
Ahy18g1340 668 SMART ubc_7 409 566 - -
Ahy18g1340 668 CDD UBCc 409 535 IPR000608 -
Ahy18g1340 668 MobiDBLite consensus disorder prediction 219 239 - -
Ahy18g1340 668 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 69 657 - -
Ahy18g1340 668 MobiDBLite consensus disorder prediction 203 239 - -
Ahy18g1340 668 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1340 Ahy-Chr18 24646598 24651088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1340 379 649 Miscellaneous Gene Families AT2G33770 52.747 2.17e-86 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1340 K10581 - ccaj:109805727 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1340 18 24646598 24651088 Ahy18g1340 18 24646598 24651088 ECH