Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy18g1309 | ATGGTGGATCGCTTTAGGCCTGTTTCCATTGAAGAGTTACCTTCACACTTGATCTTAGAGATTCTGTGCTCGGGAAGGTTAAGTGCAATAGACCTTGCTTGCTTGGAGCTTACTTCAAAAACTTTTGGTGGTAGCCATGGATTGTATCCATTCAAGTTTAGTTCATTGGTGGACTTTGCTGCATTTCAGTTGTGTGCCTCCCATATTATCTACTCTAAGACGAGTTTAAATTCTCAGAAGGAGTTGTATGATCGATGCGGCGCAAATTGGAAGCGGGTCTTGAGGTTCTTACAGTCTGTTGAACAATCCTCTGAGATGGTGGAGACATCAGCAGGCAATATGCAAATTACAACTGGAAAGTATCACACCCTGTTGATCAGCAATTCCTCTGTCTACTCTTGTGGTTCTGGATTATCTGGTGTACTTGGTCAAGGGCCTGAAACACAATGCGTAGCATTTACCCGGATAAGTTTCCCACCTTTGGCACGTGTAGTTCATGTATCAGCCTCCTTTAATCATGCAGCTTTTGTTATGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCATCTTCTTGCTGTGGCCATAGCGATACAAGCCGACCGATTTCCAGGCCACGTCTTGTTGAATCCCTGAAGGGAGTCCCTTGCAAGCAGGTTGCAGCAGGGCTTAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTTTATACATGTGGAACCAATTCGCATGGCCAACTTGGCCATGGTGACTCTCAGGACAGACCAACTCCAAAAATGATTGAAGTCCTTGGTAATGCAGATCCTGTTGTTCAGATTGCTGCTGGACCAAGCTATATCTTAGCTGTAACAGCGAACGGAGCTGTATACTCCTTTGGGTCGGGGGCTAACTTCTGCCTTGGTCATGGGGAGCAACATAATGAGTTTCTGCCACGTGCTATACAGAAGTTTAGAAGAAAAGGTATTCATGTTGTCCGTGTATCTGCCGGGGATGAGCATGCAGTGGCACTTGATTCAAATGGATTCGTATATACGTGGGGCAAGGGATACTGTGGTGCTCTTGGCCTTGGGGACGAGATTGAGAAAACTACCCCCGAGATTGTGACCGGTCTTAAGAATCACTTGGCTGTTCAGGTCTGTGCAAGAAAGAGGAAAACTTTTGTGCTAATTGATTCTGGTTCAGTCTATGGCTTTGGTTCGATGGGATTCGGCAGCCTGGGATTTCTCGACAGAGGGGTATATGATAAAATCTTGAAGCCAAGAATCTTGGATACCTTAAAAACTCACCGTGTTTCACAAATTAGCACTGGATTGTATCATACAGTGGCAATCACAAGCAGTGGAAGGATATTTGGATTTGGAGACAATGAAAGAGCACAACTTGGTCATGACACATTAAGAGGGTGCCTTGAACCAACTGAGATTTTCGTCAAAGAAGATTCTTCACAAGAAAATATAGATCCCGACATTTGA | 1473 | 0.4453 | MVDRFRPVSIEELPSHLILEILCSGRLSAIDLACLELTSKTFGGSHGLYPFKFSSLVDFAAFQLCASHIIYSKTSLNSQKELYDRCGANWKRVLRFLQSVEQSSEMVETSAGNMQITTGKYHTLLISNSSVYSCGSGLSGVLGQGPETQCVAFTRISFPPLARVVHVSASFNHAAFVMQSGEVFTCGDNSSSCCGHSDTSRPISRPRLVESLKGVPCKQVAAGLNFTVFLTRQGHVYTCGTNSHGQLGHGDSQDRPTPKMIEVLGNADPVVQIAAGPSYILAVTANGAVYSFGSGANFCLGHGEQHNEFLPRAIQKFRRKGIHVVRVSAGDEHAVALDSNGFVYTWGKGYCGALGLGDEIEKTTPEIVTGLKNHLAVQVCARKRKTFVLIDSGSVYGFGSMGFGSLGFLDRGVYDKILKPRILDTLKTHRVSQISTGLYHTVAITSSGRIFGFGDNERAQLGHDTLRGCLEPTEIFVKEDSSQENIDPDI* | 491 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy18g1309 | 490 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 434 | 444 | IPR000408 | - | |
| Ahy18g1309 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 393 | 447 | IPR000408 | - | |
| Ahy18g1309 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 180 | 230 | IPR000408 | - | |
| Ahy18g1309 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 286 | 337 | IPR000408 | - | |
| Ahy18g1309 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 340 | 381 | IPR000408 | - | |
| Ahy18g1309 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 234 | 282 | IPR000408 | - | |
| Ahy18g1309 | 490 | SUPERFAMILY | RCC1/BLIP-II | 111 | 409 | IPR009091 | - | |
| Ahy18g1309 | 490 | PANTHER | BNAA01G28890D PROTEIN | 9 | 482 | - | - | |
| Ahy18g1309 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 234 | 286 | IPR000408 | - | |
| Ahy18g1309 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 341 | 392 | IPR000408 | - | |
| Ahy18g1309 | 490 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 327 | 337 | IPR000408 | - | |
| Ahy18g1309 | 490 | Gene3D | - | 86 | 266 | IPR009091 | - | |
| Ahy18g1309 | 490 | Gene3D | - | 267 | 487 | IPR009091 | - | |
| Ahy18g1309 | 490 | SUPERFAMILY | RCC1/BLIP-II | 377 | 476 | IPR009091 | - | |
| Ahy18g1309 | 490 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 9 | 482 | - | - | |
| Ahy18g1309 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 431 | 459 | - | - | |
| Ahy18g1309 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 287 | 340 | IPR000408 | - | |
| Ahy18g1309 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 181 | 233 | IPR000408 | - | |
| Ahy18g1309 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 382 | 400 | IPR000408 | - | |
| Ahy18g1309 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 289 | 303 | IPR000408 | - | |
| Ahy18g1309 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 130 | 146 | IPR000408 | - | |
| Ahy18g1309 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 273 | 289 | IPR000408 | - | |
| Ahy18g1309 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 443 | 464 | IPR000408 | - | |
| Ahy18g1309 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 183 | 199 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy18g1309 | Ahy-Chr18 | 23863266 | 23867699 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy18g1309 | - | - | lang:109357264 | 862.448 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Ahy18g1309 | 18 | 23863266 | 23867699 | Ahy18g1309 | 18 | 23863266 | 23867699 | ECH | |
| Ahy18g1309 | 18 | 23863266 | 23867699 | Ahy8g1959 | 8 | 39290578 | 39295047 | hybridization |