Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1286 ATGCAACGTGTTATGGCAGCGAACTTGTTGCAACGCAGATTCTTTACCCGACAAAGGCAAATATATGAAATGACAAACATGGCGGCAGCAACAATAACAACAACAAGAAAGCGAGTAACGGAGCCATGTGACGTGTTCCTGAACCATAGGTGCAGGGACACGAAGAAAACAGTGGCTTCGTTACTCTACGATCACCTAAGGAGGAACGGCTTCAACCCTTTCTTGGACAACAAAAACATGAAGCCAGGGGACAAACTCTTTGATAAGATAAATAGAGGAGTTCTCGAATGCAAGATCGGTGTTGCCGTCTTCTCCCCTCGTTATTGTGAATCATACTTTTGCCTACACGAGCTAGCGCTTCTAATGGAGTGTAGGAAGAAGGTGATACCCATCTTCTGCGATGTGAAACCTTCTCAGCTTCGTGTTCTTAACAATGGCAAATGGTCCCATGAAGATTTTCGCAGGTTTCGTTGGGCTCTTGACGAGGCCAAACATATTGTTGGACTCACCTACAATTCCTCAAAAGGGAACTTATCAGAAATCGTGAATAGTGCGACTGAAATCATTATTGGAAGCATGATAGAGCTTGAAAATGAAGAGCATGTGCAGATGCACCATCATCAGAACATGCCCATTATTGCTCTTTAG 648 0.4398 MQRVMAANLLQRRFFTRQRQIYEMTNMAAATITTTRKRVTEPCDVFLNHRCRDTKKTVASLLYDHLRRNGFNPFLDNKNMKPGDKLFDKINRGVLECKIGVAVFSPRYCESYFCLHELALLMECRKKVIPIFCDVKPSQLRVLNNGKWSHEDFRRFRWALDEAKHIVGLTYNSSKGNLSEIVNSATEIIIGSMIELENEEHVQMHHHQNMPIIAL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1286 215 SUPERFAMILY Toll/Interleukin receptor TIR domain 41 168 IPR035897 -
Ahy18g1286 215 Pfam TIR domain 44 141 IPR000157 GO:0007165
Ahy18g1286 215 ProSiteProfiles TIR domain profile. 41 189 IPR000157 GO:0007165
Ahy18g1286 215 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 34 210 - -
Ahy18g1286 215 PANTHER COP1-INTERACTING PROTEIN-RELATED 34 210 - -
Ahy18g1286 215 Gene3D - 38 194 IPR035897 -
Ahy18g1286 215 SMART till_3 42 188 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1286 Ahy-Chr18 23151205 23152990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1286 45 172 Miscellaneous Gene Families AT1G57670 31.724 4.51e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1286 - - adu:107462512 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1286 18 23151205 23152990 Ahy18g1286 18 23151205 23152990 ECH
Ahy18g1286 18 23151205 23152990 Ahy8g1943 8 38998750 39000848 hybridization