Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1070 ATGGCTCCAATCACAAACTTGCATGGACTCCCAAAAACTTTGGCTCCCATTGTTACATGCCTTCCAAATGCCCATAGGAACCTTCATCTCAACAAAAGAGTGCAAATAGTTGGAAGCAATAATAATACGGCACATGAATCAGAATCTTCATCACAAGAATCTCTTGTTGACACTACTACAAGAAGAGCAGCAATAGGCCTTGTTGCCTCCATAGTTCTCACTGCCCAATTCCATGACAAGATTTCACTTGCTCAAGAACATACCCATAATGGCTGGTGGTATGATGATTTACCTTTGCCTCTTCCAACTGTCACTAACAACCTTGCAAATGAGAAAACGGGTACCCGTTCATTTATTAAGAAGGGAATATACATGGCAGACATTGGAGTTAAAGGGAGTGTTTATAGGATTAAGAAATATGCATTTGATCTTCTGGCTATGGCGGATTTGATTGCAGCAGACACACTCAATTATGTGAGGAGATACCTCAGAATCAAGTCTACTTTCATGTACTATGATTTTGACAAAGTTATATCAGCTATGCCAGTGGATAATAAGCAACAATTAACTGACATGGCTAACAAATTATTTGATAATTTTGAAAAGCTTGAAGAAGCTTCAAGGAGGAAAAGTTTACCTGATACACAATCAATCTACCAAGAAACTGAAGTCATGCTACATGATGTCATGGATCGGATGGATGTAATGTATAAAACAATTTGA 723 0.3817 MAPITNLHGLPKTLAPIVTCLPNAHRNLHLNKRVQIVGSNNNTAHESESSSQESLVDTTTRRAAIGLVASIVLTAQFHDKISLAQEHTHNGWWYDDLPLPLPTVTNNLANEKTGTRSFIKKGIYMADIGVKGSVYRIKKYAFDLLAMADLIAADTLNYVRRYLRIKSTFMYYDFDKVISAMPVDNKQQLTDMANKLFDNFEKLEEASRRKSLPDTQSIYQETEVMLHDVMDRMDVMYKTI* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1070 240 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC 1 233 - -
Ahy18g1070 240 Gene3D - 97 234 IPR023222 -
Ahy18g1070 240 SUPERFAMILY Oxygen-evolving enhancer protein 3, 123 233 IPR023222 -
Ahy18g1070 240 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 52 233 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Ahy18g1070 240 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 1 233 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Ahy18g1070 240 Coils Coil 186 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1070 Ahy-Chr18 15951165 15952832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g1070 K08901 - gmx:100783530 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1070 18 15951165 15952832 Ahy18g1070 18 15951165 15952832 ECH
Ahy18g1070 18 15951165 15952832 Ahy8g1805 8 36278438 36280048 hybridization